Clone FMO10350 Report

Search the DGRC for FMO10350

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:103
Well:50
Vector:pMK33-CFH-BD
Associated Gene/Transcript
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10350.5prime Sequence

1164 bp (1056 high quality bases) assembled on 2010-11-12

> FMO10350.5prime
CAGTCGACATGCCCTTGGAAGAGAAGGAAGTTGAGTACTTTTTCGCATCG
GACGCCTCAGCCGTCATAGAGCACACTAACCGGGTCATCTATTTGGAGGA
CGACGATGTTGCTGCTGTTCGGGATGGAACTTTGAGTATACATCGCCTAA
AGAAGAGCCTGGATGATCCGCACGCTCGCGAAATCACTACCCTAAAAATG
GAAATTCAACAGATCATGAAGGGAAACTATGACTATTTTATGCAAAAGGA
GATTTTCGAGCAGCCCGACTCCGTGGTGAACACAATGCGCGGTCGCGTCC
GCTTCGATGGTAACGCCATAGTGCTCGGCGGGATCAAAGACTACATTCCT
GAAATCAAACGCTGTCGACGCCTGATGTTGATTGGATGTGGCACATCTTA
CCACAGCGCTGTAGCCACTAGGCAGCTGCTCGAAGAACTCACAGAGCTTC
CCGTGATGGTTGAGCTGGCTTCCGACTTTTTAGACCGAAACACTCCTATT
TTTCGAGACGACGTCTGCTTTTTTATATCGCAGTCCGGAGAGACTGCCGA
CACCCTGATGGCCTTACGTTACTGTAAGCAGCGAGGAGCCCTGATTGTGG
GCATTACGAATACCGTAGGCAGCAGCATATGTCGGGAATCGCATTGTGGA
GTGCACATTAATGCCGGACCAGAGATAGGCGTGGCCTCGACCAAGGCATA
CACCTCCCAATTCATTTCCCTGGTGATGTTCGCTCTAGTTATGTCCGAGA
TCGACTGTCACTGCAACAGCGACGGCTTGAGATTCTGCAGGCGTTGTCCA
AGCTCGCGGATCAAATCCGAGACGTTCTGCAGCTGGACTCCAAGTTAAAG
AACTGGGCCAAGACCTATACCAACACAAGTCGCTTCTGATATGGTAGGGC
TACACTTTGCCACTTGCCTAGAGTGCATTGAAAGTCAAGAGTTGACTTAC
ATGCACAGCGAGGGCATCATGGCGGTGAATTGAAGCACGGCCCACTGCTC
TCGTAGACGACTCCATGCCCGTGCCTGATGATTGTTTGCGGGACCCCGTT
TACGTAAGTGCATGAACCCCTCTAACGCAGTCACATTCCGCAAGAATGCC
GAATATTATCTGCCAGGAGAACAGGGAAACCAGGCTTCTCCTCCCGGCCA
TCTTTAAGATTTCC

FMO10350.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:09:35
Subject Length Description Subject Range Query Range Score Percent Strand
Gfat1-RH 2601 CG12449-RH 1109..2271 9..1153 5070 96.9 Plus
Gfat1-RD 2363 CG12449-RD 871..2033 9..1153 5070 96.9 Plus
Gfat1-RF 2290 CG12449-RF 798..1960 9..1153 5070 96.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:09:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4136419..4137215 97..891 3855 99.5 Plus
3R 32079331 3R 28338036..28338787 771..24 1200 77.9 Minus
3R 32079331 3R 4135292..4135382 9..99 455 100 Plus
3R 32079331 3R 4137327..4137460 937..1067 425 96.3 Plus
Blast to na_te.dros performed on 2014-11-26 17:09:34 has no hits.

FMO10350.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:15:53 Download gff for FMO10350.5prime
Subject Subject Range Query Range Percent Splice Strand
Gfat1-RB 938..2025 2..1080 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:20:24 Download gff for FMO10350.5prime
Subject Subject Range Query Range Percent Splice Strand
Gfat1-RF 793..1880 2..1080 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:49:35 Download gff for FMO10350.5prime
Subject Subject Range Query Range Percent Splice Strand
Gfat1-RF 793..1880 2..1080 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:49:35 Download gff for FMO10350.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 4135287..4135381 2..98 95 -> Plus
3R 4136421..4137260 99..930 98 -> Plus
3R 4137320..4137488 931..1093 91 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:20:24 Download gff for FMO10350.5prime
Subject Subject Range Query Range Percent Splice Strand
3RHet 2479053..2479147 2..98 95 -> Plus
3RHet 2480187..2481026 99..930 98 -> Plus
3RHet 2481086..2481280 931..1119 91 -> Plus