FMO10350.5prime Sequence
1164 bp (1056 high quality bases) assembled on 2010-11-12
> FMO10350.5prime
CAGTCGACATGCCCTTGGAAGAGAAGGAAGTTGAGTACTTTTTCGCATCG
GACGCCTCAGCCGTCATAGAGCACACTAACCGGGTCATCTATTTGGAGGA
CGACGATGTTGCTGCTGTTCGGGATGGAACTTTGAGTATACATCGCCTAA
AGAAGAGCCTGGATGATCCGCACGCTCGCGAAATCACTACCCTAAAAATG
GAAATTCAACAGATCATGAAGGGAAACTATGACTATTTTATGCAAAAGGA
GATTTTCGAGCAGCCCGACTCCGTGGTGAACACAATGCGCGGTCGCGTCC
GCTTCGATGGTAACGCCATAGTGCTCGGCGGGATCAAAGACTACATTCCT
GAAATCAAACGCTGTCGACGCCTGATGTTGATTGGATGTGGCACATCTTA
CCACAGCGCTGTAGCCACTAGGCAGCTGCTCGAAGAACTCACAGAGCTTC
CCGTGATGGTTGAGCTGGCTTCCGACTTTTTAGACCGAAACACTCCTATT
TTTCGAGACGACGTCTGCTTTTTTATATCGCAGTCCGGAGAGACTGCCGA
CACCCTGATGGCCTTACGTTACTGTAAGCAGCGAGGAGCCCTGATTGTGG
GCATTACGAATACCGTAGGCAGCAGCATATGTCGGGAATCGCATTGTGGA
GTGCACATTAATGCCGGACCAGAGATAGGCGTGGCCTCGACCAAGGCATA
CACCTCCCAATTCATTTCCCTGGTGATGTTCGCTCTAGTTATGTCCGAGA
TCGACTGTCACTGCAACAGCGACGGCTTGAGATTCTGCAGGCGTTGTCCA
AGCTCGCGGATCAAATCCGAGACGTTCTGCAGCTGGACTCCAAGTTAAAG
AACTGGGCCAAGACCTATACCAACACAAGTCGCTTCTGATATGGTAGGGC
TACACTTTGCCACTTGCCTAGAGTGCATTGAAAGTCAAGAGTTGACTTAC
ATGCACAGCGAGGGCATCATGGCGGTGAATTGAAGCACGGCCCACTGCTC
TCGTAGACGACTCCATGCCCGTGCCTGATGATTGTTTGCGGGACCCCGTT
TACGTAAGTGCATGAACCCCTCTAACGCAGTCACATTCCGCAAGAATGCC
GAATATTATCTGCCAGGAGAACAGGGAAACCAGGCTTCTCCTCCCGGCCA
TCTTTAAGATTTCC
FMO10350.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:09:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gfat1-RH | 2601 | CG12449-RH | 1109..2271 | 9..1153 | 5070 | 96.9 | Plus |
Gfat1-RD | 2363 | CG12449-RD | 871..2033 | 9..1153 | 5070 | 96.9 | Plus |
Gfat1-RF | 2290 | CG12449-RF | 798..1960 | 9..1153 | 5070 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:09:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4136419..4137215 | 97..891 | 3855 | 99.5 | Plus |
3R | 32079331 | 3R | 28338036..28338787 | 771..24 | 1200 | 77.9 | Minus |
3R | 32079331 | 3R | 4135292..4135382 | 9..99 | 455 | 100 | Plus |
3R | 32079331 | 3R | 4137327..4137460 | 937..1067 | 425 | 96.3 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:09:34 has no hits.
FMO10350.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:15:53 Download gff for
FMO10350.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gfat1-RB | 938..2025 | 2..1080 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:20:24 Download gff for
FMO10350.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gfat1-RF | 793..1880 | 2..1080 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:49:35 Download gff for
FMO10350.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gfat1-RF | 793..1880 | 2..1080 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:49:35 Download gff for
FMO10350.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4135287..4135381 | 2..98 | 95 | -> | Plus |
3R | 4136421..4137260 | 99..930 | 98 | -> | Plus |
3R | 4137320..4137488 | 931..1093 | 91 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:20:24 Download gff for
FMO10350.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3RHet | 2479053..2479147 | 2..98 | 95 | -> | Plus |
3RHet | 2480187..2481026 | 99..930 | 98 | -> | Plus |
3RHet | 2481086..2481280 | 931..1119 | 91 | -> | Plus |