FMO10354.5prime Sequence
1116 bp (1014 high quality bases) assembled on 2010-11-12
> FMO10354.5prime
CAGTCGACATGCTGCCGAGCCTGGATACCTTAATGCGTTGCTCGAAGCGA
GTTCTGCAATCGCCGCTGGAGGCGGCGGCCAGCCAGATGCGGAATGGGCA
CAGCAAGTCGGCCGCCGGGGGCATCTACGGCCCCTTTACGCCGGACAACG
ATCTCAGCTGCTCGGGACGGGGCGATTGCGTCAACAACACCTGCGTCTGC
GACATTCGGTACGCGGGCAACGAGTGCGACATCTTCAATCTGCCCTACTA
CGCCGGAATCTCCACCGTCTTCTACGTGGTGGCCCTCGTCTCGGTCATCC
AGCTGCTCATCTGCATCGTGGCCGAATATCAGCGGCTGAAGCAGCCCTCC
GTACTCCGCGCCTGTCGCATCACCACCCAGAAACTGCTCTACTTCATGGT
CTTTGTGGCGGCCTCGTTGCGAGGTGCCTACTTCACCACACCCCTGGATC
TGCAGCCACAATGGGCTGTCACCCTGATGTCCGCCTACTATCCATTGCTC
ATGACCTGCGCCTCGCTAATTGTCTGCATGTGGGCCGAGATCTTTCACCT
GCGCGACATCCGCTGGGAGAAGTCGCAGTTTCTGTCGAAGAGCTTCCTCG
GCTTCGTGGCCTTCAACTTCTTTCTGTACAGCCTGTTTGGCATAGAGGTC
TTCAACTCGCTGATCAACGCGGAGCGTCGCGACTACGCCCACATCTTCAA
CGGATGCTATGCAGTATTACTCCTGATCGTGGTGGTCTTCTTCCTCATCT
ACGGCGTGAAAGTGTTCTTTAAGCTGCGCGGCGGTTTCGTTTACGACCAG
ACGGGCAAGATTCTCGGTCCCAGCGAGGCAATTGTGAATGCCTCACAATT
GCATCAGTCGCGATTCGGACTGCTGTTTCAGCCGTGATGCTAATCGTGAT
TGTGGGCTTTCTGACTTCCGAACCTTTGGGCGACTTCTGGAGACCAAGTT
CCAGTTTACTCGCGCACCTGGCATGACTCATTTTTCGCATCGCCGAGATC
GTGTGCTCTCTGGTTTCCTGCTGCCTTTGACCTCGATGCTCTGACGCTCT
TGATTCTAATCCTCGCAAGCTCTATCCCGCCATGATCGGTCGAATCCACT
CTATGGCGGAAACCAC
FMO10354.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:09:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2991-RC | 2889 | CG2991-RC | 320..1432 | 9..1103 | 5015 | 97.7 | Plus |
| CG2991-RA | 3088 | CG2991-RA | 519..1631 | 9..1103 | 5015 | 97.7 | Plus |
| CG2991-RB | 2998 | CG2991-RB | 429..1541 | 9..1103 | 5015 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:09:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2864984..2865418 | 9..443 | 2175 | 100 | Plus |
| 2L | 23513712 | 2L | 2866330..2866734 | 538..941 | 1945 | 99.3 | Plus |
| 2L | 23513712 | 2L | 2865482..2865577 | 444..539 | 480 | 100 | Plus |
| 2L | 23513712 | 2L | 2866815..2866900 | 948..1029 | 200 | 93 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:09:43 has no hits.
FMO10354.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:15:54 Download gff for
FMO10354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2991-RC | 312..1419 | 1..1093 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:20:32 Download gff for
FMO10354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2991-RB | 423..1530 | 1..1093 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:49:41 Download gff for
FMO10354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2991-RB | 423..1530 | 1..1093 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:49:41 Download gff for
FMO10354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2864978..2865418 | 1..443 | 99 | -> | Plus |
| 2L | 2865482..2865577 | 444..539 | 100 | -> | Plus |
| 2L | 2866332..2866741 | 540..947 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:20:32 Download gff for
FMO10354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2864978..2865418 | 1..443 | 99 | -> | Plus |
| arm_2L | 2865482..2865577 | 444..539 | 100 | -> | Plus |
| arm_2L | 2866332..2866741 | 540..947 | 99 | -> | Plus |
