Clone FMO10355 Report

Search the DGRC for FMO10355

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:103
Well:55
Vector:pMK33-CFH-BD
Associated Gene/TranscriptHlc-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10355.5prime Sequence

1136 bp (1021 high quality bases) assembled on 2010-11-12

> FMO10355.5prime
CAGTCGACATGAGCCAGATGACCCAGAAAACGGTGCAATTCCACGAGCTG
GAGCTGGATCAGCGCATCCTTAAGGCGGTGGCCCAGCTGGGTTGGCAGCA
GCCCACACTTATCCAGTCGACGGCGATACCGCTGCTTCTGGAGGGCAAGG
ATGTGGTGGTGCGCGCCCGCACCGGATCCGGCAAGACTGCCACCTACGCC
CTGCCACTGATTCAGAAGATCCTTAACTCCAAACTGAACGCCAGCGAGCA
GTATGTGAGCGCTGTGGTCCTGGCGCCCACCAAGGAGCTATGCCGGCAGT
CCCGTAAGGTGATCGAGCAGCTGGTCGAGTCCTGCGGCAAGGTTGTACGC
GTGGCGGACATTGCCGATAGCTCCAACGACACGGTGACCCAGCGGCACGC
CTTGTCTGAAAGTCCCGACATTGTGGTTGCCACACCCGCCAATTTGCTGG
CCTACGCCGAGGCTGGTAGCGTGGTGGATCTGAAGCATGTGGAGACCTTG
GTGGTGGACGAGGCGGATCTGGTGTTTGCCTATGGCTACGAAAAGGACTT
CAAGCGGTTGATTAAGCACCTGCCTCCCATCTACCAGGCTGTCCTAGTCT
CCGCTACTCTAACCGACGATGTGGTGCGCATGAAAGGCCTGTGCCTGAAC
AACCCGGTTACGCTTAAACTCGAGGAGCCGGAGTTGGTGCCGCAAGATCA
GTTGTCGCACCAGCGCATTCTGGCTGAGGAAAACGATAAACCGGCTATCT
TGTACGCCTTATTGAAGCTGAGACTCATACGCGGCAAGAGCATAATCTTT
GTGAACAGCATCGATCGGTGTTACAAGGTTCGATTGTTCCTAGAGCAGTT
CGGCATCCGTGCCTGTGTCTTGAACTCCGAGCTGCCTGCCAACATTCGCA
TCCACACAATTAGCCAGTTCAACAAGGGCACCTACGACATAATCATTGCC
TCGACGAACATCATTATGGAAAAGCCAGGAGCAATCAGCGACTAACCGAA
AATCTCCTCGAGCGGCGACTGGAGTCAAGTGCTTCCCGCGGCCATGACTT
TCAGTGCGGGGAACACGTATCACTTCGCGACTCCAGATGTCACGTCTTAT
ATATCCATCCGGCTGGCAGACGCTAAAGAAATAACA

FMO10355.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:09:47
Subject Length Description Subject Range Query Range Score Percent Strand
Hlc-RB 1963 CG1666-RB 95..1233 8..1136 5150 97.6 Plus
Hlc-RA 2116 CG1666-RA 95..1233 8..1136 5150 97.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:09:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21386973..21387735 827..65 3785 99.7 Minus
X 23542271 X 21386543..21386786 1058..819 870 95.1 Minus
X 23542271 X 21387785..21387852 75..8 340 100 Minus
Blast to na_te.dros performed on 2014-11-26 17:09:46 has no hits.

FMO10355.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:15:55 Download gff for FMO10355.5prime
Subject Subject Range Query Range Percent Splice Strand
Hlc-RA 82..1215 1..1125 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:20:34 Download gff for FMO10355.5prime
Subject Subject Range Query Range Percent Splice Strand
Hlc-RA 88..1221 1..1125 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:49:44 Download gff for FMO10355.5prime
Subject Subject Range Query Range Percent Splice Strand
Hlc-RA 88..1221 1..1125 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:49:44 Download gff for FMO10355.5prime
Subject Subject Range Query Range Percent Splice Strand
X 21386471..21386778 827..1125 92 <- Minus
X 21386974..21387725 75..826 100 <- Minus
X 21387786..21387855 1..74 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:20:34 Download gff for FMO10355.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 21257498..21257805 827..1125 92 <- Minus
arm_X 21258001..21258752 75..826 100 <- Minus
arm_X 21258813..21258882 1..74 94   Minus