FMO10355.5prime Sequence
1136 bp (1021 high quality bases) assembled on 2010-11-12
> FMO10355.5prime
CAGTCGACATGAGCCAGATGACCCAGAAAACGGTGCAATTCCACGAGCTG
GAGCTGGATCAGCGCATCCTTAAGGCGGTGGCCCAGCTGGGTTGGCAGCA
GCCCACACTTATCCAGTCGACGGCGATACCGCTGCTTCTGGAGGGCAAGG
ATGTGGTGGTGCGCGCCCGCACCGGATCCGGCAAGACTGCCACCTACGCC
CTGCCACTGATTCAGAAGATCCTTAACTCCAAACTGAACGCCAGCGAGCA
GTATGTGAGCGCTGTGGTCCTGGCGCCCACCAAGGAGCTATGCCGGCAGT
CCCGTAAGGTGATCGAGCAGCTGGTCGAGTCCTGCGGCAAGGTTGTACGC
GTGGCGGACATTGCCGATAGCTCCAACGACACGGTGACCCAGCGGCACGC
CTTGTCTGAAAGTCCCGACATTGTGGTTGCCACACCCGCCAATTTGCTGG
CCTACGCCGAGGCTGGTAGCGTGGTGGATCTGAAGCATGTGGAGACCTTG
GTGGTGGACGAGGCGGATCTGGTGTTTGCCTATGGCTACGAAAAGGACTT
CAAGCGGTTGATTAAGCACCTGCCTCCCATCTACCAGGCTGTCCTAGTCT
CCGCTACTCTAACCGACGATGTGGTGCGCATGAAAGGCCTGTGCCTGAAC
AACCCGGTTACGCTTAAACTCGAGGAGCCGGAGTTGGTGCCGCAAGATCA
GTTGTCGCACCAGCGCATTCTGGCTGAGGAAAACGATAAACCGGCTATCT
TGTACGCCTTATTGAAGCTGAGACTCATACGCGGCAAGAGCATAATCTTT
GTGAACAGCATCGATCGGTGTTACAAGGTTCGATTGTTCCTAGAGCAGTT
CGGCATCCGTGCCTGTGTCTTGAACTCCGAGCTGCCTGCCAACATTCGCA
TCCACACAATTAGCCAGTTCAACAAGGGCACCTACGACATAATCATTGCC
TCGACGAACATCATTATGGAAAAGCCAGGAGCAATCAGCGACTAACCGAA
AATCTCCTCGAGCGGCGACTGGAGTCAAGTGCTTCCCGCGGCCATGACTT
TCAGTGCGGGGAACACGTATCACTTCGCGACTCCAGATGTCACGTCTTAT
ATATCCATCCGGCTGGCAGACGCTAAAGAAATAACA
FMO10355.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:09:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hlc-RB | 1963 | CG1666-RB | 95..1233 | 8..1136 | 5150 | 97.6 | Plus |
Hlc-RA | 2116 | CG1666-RA | 95..1233 | 8..1136 | 5150 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:09:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 21386973..21387735 | 827..65 | 3785 | 99.7 | Minus |
X | 23542271 | X | 21386543..21386786 | 1058..819 | 870 | 95.1 | Minus |
X | 23542271 | X | 21387785..21387852 | 75..8 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:09:46 has no hits.
FMO10355.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:15:55 Download gff for
FMO10355.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hlc-RA | 82..1215 | 1..1125 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:20:34 Download gff for
FMO10355.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hlc-RA | 88..1221 | 1..1125 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:49:44 Download gff for
FMO10355.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hlc-RA | 88..1221 | 1..1125 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:49:44 Download gff for
FMO10355.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21386471..21386778 | 827..1125 | 92 | <- | Minus |
X | 21386974..21387725 | 75..826 | 100 | <- | Minus |
X | 21387786..21387855 | 1..74 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:20:34 Download gff for
FMO10355.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21257498..21257805 | 827..1125 | 92 | <- | Minus |
arm_X | 21258001..21258752 | 75..826 | 100 | <- | Minus |
arm_X | 21258813..21258882 | 1..74 | 94 | | Minus |