FMO10356.5prime Sequence
818 bp (818 high quality bases) assembled on 2010-11-12
> FMO10356.5prime
CAGTCGACATGGATTCTACTTTAAATATTGAGAATGTCAATGACCCAACA
TCCATTGCATCTGATTTATCGGCCGAAAACACTAAAGCAGACCTTGTTTC
GCTAAATGAACCGAATGTCAATGACCAAACATCCAGTGCATCTGATTTGA
CGGCCGAAAACACTAAAGCAGACCATGATTCGCTAAATAAACCTAAGGAT
TTTAATAACCAAATTCTGAACATTATATCGGATATAGATATAAATATAAA
AGCACAGGAAAAAATAACACAGCTTAAAGAACAAGAACTAAAACTCATTC
AGAAACAGAATGATCTGGCAAATGAAATCCATAAGCAGCAGATCCTAGCT
AAGCAGCTTAGTGCACAAAATCAGCTTAAACAAAATGAATGTCAAAGTGG
AGAGCTCGACTTACACAGTCAATATCAAAATGAGCGCGGCGGACCCACCT
CGACACTGTATCAGGAAAAAAATATAGCCAGTAAAGAATCCGCTAATGTG
TCGAAGACGGTTGATTTGCGAAAAATATTTACACCTGCGACCGATGCTGC
TGAAATATTACCGAAAAACCGAAAGCTATATGCCTCGTCTGCATTTTATT
CTCCAACACTACACCCTACAGTGGAAGACCAAGTCGAGCTAGCTCGAAGA
ATTTCACATTCATTAAGCGATATAAGTAATCAAACCTCTAAGGGTCAGTC
TATGTATGTCAATCGCAAAAAACGCTCAGACAAATGGGTTCATGAAGGTG
GATCTCAAGGTAATGTTTTTTTTCAATATTTTTTGTTGTCAGTCAGTTAT
GCAAGCTTTCTAGACCAT
FMO10356.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:09:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1674-RD | 1457 | CG1674-RD | 222..1013 | 9..800 | 3960 | 100 | Plus |
| CG1674-RJ | 2419 | CG1674-RJ | 195..951 | 9..765 | 3770 | 99.9 | Plus |
| CG1674-RI | 2131 | CG1674-RI | 222..972 | 9..759 | 3755 | 100 | Plus |
| CG1674-RD | 1457 | CG1674-RD | 245..325 | 113..193 | 300 | 91.4 | Plus |
| CG1674-RD | 1457 | CG1674-RD | 326..406 | 32..112 | 300 | 91.4 | Plus |
| CG1674-RJ | 2419 | CG1674-RJ | 218..298 | 113..193 | 300 | 91.4 | Plus |
| CG1674-RJ | 2419 | CG1674-RJ | 299..379 | 32..112 | 300 | 91.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:09:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 237269..237560 | 195..486 | 1460 | 100 | Plus |
| 4 | 1348131 | 4 | 240645..240874 | 571..800 | 1150 | 100 | Plus |
| 4 | 1348131 | 4 | 240314..240410 | 486..582 | 440 | 96.9 | Plus |
| 4 | 1348131 | 4 | 234263..234345 | 31..113 | 415 | 100 | Plus |
| 4 | 1348131 | 4 | 236394..236475 | 113..194 | 410 | 100 | Plus |
| 4 | 1348131 | 4 | 236393..236474 | 31..112 | 305 | 91.5 | Plus |
| 4 | 1348131 | 4 | 234264..234344 | 113..193 | 300 | 91.4 | Plus |
Blast to na_te.dros performed 2014-11-26 17:09:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tirant | 8526 | Tirant TIRANT 8526bp | 577..646 | 238..307 | 116 | 62.9 | Plus |
FMO10356.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:15:56 Download gff for
FMO10356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1674-RD | 215..1012 | 6..804 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:20:37 Download gff for
FMO10356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1674-RD | 219..1016 | 6..804 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:49:45 Download gff for
FMO10356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1674-RD | 219..1016 | 6..804 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:49:45 Download gff for
FMO10356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 237269..237559 | 195..485 | 100 | -> | Plus |
| 4 | 240314..240398 | 486..570 | 100 | -> | Plus |
| 4 | 231951..231977 | 6..32 | 96 | -> | Plus |
| 4 | 234265..234345 | 33..113 | 100 | -> | Plus |
| 4 | 236395..236475 | 114..194 | 100 | -> | Plus |
| 4 | 240645..240877 | 571..804 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:20:37 Download gff for
FMO10356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 260940..261024 | 486..570 | 100 | -> | Plus |
| arm_4 | 261271..261503 | 571..804 | 99 | | Plus |
| arm_4 | 257895..258185 | 195..485 | 100 | -> | Plus |
| arm_4 | 252577..252603 | 6..32 | 96 | -> | Plus |
| arm_4 | 254891..254971 | 33..113 | 100 | -> | Plus |
| arm_4 | 257021..257101 | 114..194 | 100 | -> | Plus |
