FMO10361.5prime Sequence
1083 bp (997 high quality bases) assembled on 2010-11-12
> FMO10361.5prime
CAGTCGACATGTCCCGCCAACGAAGGATCTTCGGTAACAATGGAGCTCCC
ACTGCCTCATTGGCATCAATTGCAAATGTTCTAGAGTTTATGGATGCACA
CGACGTTATAAGTTTGGCCCTGGAGCAGTCGAGATTGGCATTCGAAAACC
AGCGGATGGACAACATGATGGACTTCCATGGGAATGGTAGCAGTAGCTCG
CATCAGCAGCAGCAACTGACAGCTTTCCATGCGCCACCACCTGCTTTGCG
TCACAAGCTAGCAGGTATTGGTGCTGGGCGGTTGACGGTTCACAAGTGGC
CATATCTTCCCGTCGGTTTCACCCGTAGCAATAAGGAGATTGTACGCACC
ATGAATGCTATACAGCCGATGCTGCAGAATGCATTCCATTGCAAATCCAG
GGGCGGCTCAGGTTCCAAGGATGCCAGTTCGTACAATACGGTGAGTGGAC
CGCTAACCTGGCGCCAATTCCATCGACTGGCAGGCCGTGCATCCGGACAA
TGTGAGCCGCAACCGATACCATCCGTGGTGGTGGGCTACGAGAAGGATTG
GATCTCGGTGGCACCGCACTCCATCCACTATTGGGATAAGTTTCTCCTGG
AACCGTACTCCTATGCCAGGGATGTTGTATACGTGGTAGTGTGTCCGGAC
AACGAGCATGTGGTAAATTGTACTCGCAGCTATTTCCGGGAACTAAGCAG
CACCTACGAGATGTGCAAGCTGGGCAAACACACACCCATCCGAGGATGGG
ATGGTTTCCTTCAAGTAGCGCTGCTCGCAACAACGTGCCTGCGGATCGGG
AAACAACTCCCTTGGATGATTGGCTGCGTACCCTGAACATGCTGCTCTGG
CGGAGCAATCCGTCGGTATGCAGTTGCCTTTATTCACCAGTTGGCTCCAT
ACCTAAGTCGAGTGCCAAATGATAAAACGCTGTTGAATCCACCAGATGGC
AGTGGCACTCCCACTCTAAAGGAGAGCTTCTTGCTCCTCGAATAGCTCTT
CAGTCAGCCGATTGCAGCGGGGACTTACCCACGATTAATTAGCTGGAGCA
GTCGACCCAGTCCACCGATGGAACTACGATAAA
FMO10361.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:09:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| skd-RF | 9982 | CG9936-RF | 5587..6618 | 9..1033 | 4920 | 98.9 | Plus |
| skd-RE | 10703 | CG9936-RE | 6308..7339 | 9..1033 | 4920 | 98.9 | Plus |
| skd-RD | 10465 | CG9936-RD | 6070..7101 | 9..1033 | 4920 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:09:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20997678..20998709 | 1033..9 | 4755 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:09:53 has no hits.
FMO10361.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:15:56 Download gff for
FMO10361.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| skd-RE | 6503..7560 | 1..1049 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:20:39 Download gff for
FMO10361.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| skd-RD | 6063..7120 | 1..1049 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:49:47 Download gff for
FMO10361.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| skd-RD | 6063..7120 | 1..1049 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:49:47 Download gff for
FMO10361.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20997659..20998715 | 1..1049 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:20:39 Download gff for
FMO10361.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20990759..20991815 | 1..1049 | 98 | | Minus |
