Clone FMO10362 Report

Search the DGRC for FMO10362

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:103
Well:62
Vector:pMK33-CFH-BD
Associated Gene/TranscriptFps85D-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10362.5prime Sequence

1101 bp (1014 high quality bases) assembled on 2010-11-12

> FMO10362.5prime
CAGTCGACATGGGCTTCTCATCAGCCCTCCAAAGTCGCGCCGCCCACGAG
GCGCTGATCGTCCGCCAGGATGCCGAACTCCGGCTAATGGAGACAATGAA
GCGATCCATCCAGATGAAGGCCAAGTGCGACAAGGAGTACGCCATCAGCC
TGACCGCTGTGGCCCAGCAGGGTCTCAAGATCGATCGGGCTGACGAAATG
CAAGGCAGCCTGATCTCCAAATCCTGGCGATCCTACATGGATGAACTGGA
CCACCAGGCCAAACAGTTCAAGTTCAACGCGGAGCAGCTGGAGGTCGTCT
GCGATAAGTTGACCCACCTCTCGCAGGACAAACGGAAGGCCAGAAAGGCC
TACCAGGAGGAGCATGCCAAGATCGCAGCACGCCTGAATCATCTCACCGA
CGAGGTGGTGCGCAAGAAATCTGAATACCAAAAACATTTGGAGGGCTACA
AGGCGCTGCGCACGCGCTTCGAGGAGAACTACATAAAGGCACCCAGTCGC
AGTGGCCGCAAGCTGGACGATGTGCGTGACAAGTATCAGAAGGCCTGCCG
CAAATTGCATCTCACACACAACGAGTACGTGCTGTCCATCACGGAAGCCA
TCGAAGTGGAGAAGGACTTTCGCAACGTCTTGCTGCCGGGACTGCTGGAG
CATCAGCAGTCCGTTCAGGAGAGCTTCATCCTGCTGTGGCGCAACATCCT
GCAGGAGGCGGCCCAGTATGGCGACCTCACGGCCGACAAGTACAAGGAGA
TCCAGAAGCGCATTGACACTGTGATAGGGAGCATCAATCCGACCGAGGAG
TACGGCGAGTTCACCGAGAAATACAAAACCTCTCCCACAACACCGCTGCT
CTTCCAGTTCGATGAGACGCTCATCCAGGATATTCCCGGCAAATTGCAGT
CGAGCACATTGACAGTGGACACCTCACGTGACTGGCTGCGTATCGTCTCA
GGAACTGGAGGAGCCGTCAGGATTGCCAGGAGAGCGATGAAATGATCGAG
CATGTGAATGGTGGCTCGCCGGTGGCCAATGCACATTAATTCACGCATAT
CATCAACCGCATCAGTCAACAGATAGCTATGCGCAGTCCAGACTATGCAC
T

FMO10362.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:09:57
Subject Length Description Subject Range Query Range Score Percent Strand
FER-RF 3599 CG8874-RF 342..1375 8..1031 4920 99 Plus
FER-RE 3596 CG8874-RE 342..1375 8..1031 4920 99 Plus
FER-RB 3395 CG8874-RB 342..1375 8..1031 4920 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:09:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9373331..9373668 826..489 1690 100 Minus
3R 32079331 3R 9392740..9392937 205..8 990 100 Minus
3R 32079331 3R 9390886..9391075 392..203 950 100 Minus
3R 32079331 3R 9373054..9373268 1031..827 600 94 Minus
3R 32079331 3R 9373779..9373875 489..393 485 100 Minus
Blast to na_te.dros performed on 2014-11-26 17:09:56 has no hits.

FMO10362.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:15:57 Download gff for FMO10362.5prime
Subject Subject Range Query Range Percent Splice Strand
Fps85D-RB 333..1387 1..1043 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:20:42 Download gff for FMO10362.5prime
Subject Subject Range Query Range Percent Splice Strand
Fps85D-RB 336..1390 1..1043 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:49:49 Download gff for FMO10362.5prime
Subject Subject Range Query Range Percent Splice Strand
FER-RB 336..1390 1..1043 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:49:49 Download gff for FMO10362.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9392741..9392940 1..204 98   Minus
3R 9373039..9373268 827..1043 93 <- Minus
3R 9373331..9373667 490..826 100 <- Minus
3R 9373779..9373875 393..489 100 <- Minus
3R 9390886..9391073 205..392 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:20:42 Download gff for FMO10362.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5218463..5218662 1..204 98   Minus
arm_3R 5198761..5198990 827..1043 93 <- Minus
arm_3R 5199053..5199389 490..826 100 <- Minus
arm_3R 5199501..5199597 393..489 100 <- Minus
arm_3R 5216608..5216795 205..392 100 <- Minus