FMO10362.5prime Sequence
1101 bp (1014 high quality bases) assembled on 2010-11-12
> FMO10362.5prime
CAGTCGACATGGGCTTCTCATCAGCCCTCCAAAGTCGCGCCGCCCACGAG
GCGCTGATCGTCCGCCAGGATGCCGAACTCCGGCTAATGGAGACAATGAA
GCGATCCATCCAGATGAAGGCCAAGTGCGACAAGGAGTACGCCATCAGCC
TGACCGCTGTGGCCCAGCAGGGTCTCAAGATCGATCGGGCTGACGAAATG
CAAGGCAGCCTGATCTCCAAATCCTGGCGATCCTACATGGATGAACTGGA
CCACCAGGCCAAACAGTTCAAGTTCAACGCGGAGCAGCTGGAGGTCGTCT
GCGATAAGTTGACCCACCTCTCGCAGGACAAACGGAAGGCCAGAAAGGCC
TACCAGGAGGAGCATGCCAAGATCGCAGCACGCCTGAATCATCTCACCGA
CGAGGTGGTGCGCAAGAAATCTGAATACCAAAAACATTTGGAGGGCTACA
AGGCGCTGCGCACGCGCTTCGAGGAGAACTACATAAAGGCACCCAGTCGC
AGTGGCCGCAAGCTGGACGATGTGCGTGACAAGTATCAGAAGGCCTGCCG
CAAATTGCATCTCACACACAACGAGTACGTGCTGTCCATCACGGAAGCCA
TCGAAGTGGAGAAGGACTTTCGCAACGTCTTGCTGCCGGGACTGCTGGAG
CATCAGCAGTCCGTTCAGGAGAGCTTCATCCTGCTGTGGCGCAACATCCT
GCAGGAGGCGGCCCAGTATGGCGACCTCACGGCCGACAAGTACAAGGAGA
TCCAGAAGCGCATTGACACTGTGATAGGGAGCATCAATCCGACCGAGGAG
TACGGCGAGTTCACCGAGAAATACAAAACCTCTCCCACAACACCGCTGCT
CTTCCAGTTCGATGAGACGCTCATCCAGGATATTCCCGGCAAATTGCAGT
CGAGCACATTGACAGTGGACACCTCACGTGACTGGCTGCGTATCGTCTCA
GGAACTGGAGGAGCCGTCAGGATTGCCAGGAGAGCGATGAAATGATCGAG
CATGTGAATGGTGGCTCGCCGGTGGCCAATGCACATTAATTCACGCATAT
CATCAACCGCATCAGTCAACAGATAGCTATGCGCAGTCCAGACTATGCAC
T
FMO10362.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:09:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
FER-RF | 3599 | CG8874-RF | 342..1375 | 8..1031 | 4920 | 99 | Plus |
FER-RE | 3596 | CG8874-RE | 342..1375 | 8..1031 | 4920 | 99 | Plus |
FER-RB | 3395 | CG8874-RB | 342..1375 | 8..1031 | 4920 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:09:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9373331..9373668 | 826..489 | 1690 | 100 | Minus |
3R | 32079331 | 3R | 9392740..9392937 | 205..8 | 990 | 100 | Minus |
3R | 32079331 | 3R | 9390886..9391075 | 392..203 | 950 | 100 | Minus |
3R | 32079331 | 3R | 9373054..9373268 | 1031..827 | 600 | 94 | Minus |
3R | 32079331 | 3R | 9373779..9373875 | 489..393 | 485 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:09:56 has no hits.
FMO10362.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:15:57 Download gff for
FMO10362.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fps85D-RB | 333..1387 | 1..1043 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:20:42 Download gff for
FMO10362.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fps85D-RB | 336..1390 | 1..1043 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:49:49 Download gff for
FMO10362.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FER-RB | 336..1390 | 1..1043 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:49:49 Download gff for
FMO10362.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9392741..9392940 | 1..204 | 98 | | Minus |
3R | 9373039..9373268 | 827..1043 | 93 | <- | Minus |
3R | 9373331..9373667 | 490..826 | 100 | <- | Minus |
3R | 9373779..9373875 | 393..489 | 100 | <- | Minus |
3R | 9390886..9391073 | 205..392 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:20:42 Download gff for
FMO10362.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5218463..5218662 | 1..204 | 98 | | Minus |
arm_3R | 5198761..5198990 | 827..1043 | 93 | <- | Minus |
arm_3R | 5199053..5199389 | 490..826 | 100 | <- | Minus |
arm_3R | 5199501..5199597 | 393..489 | 100 | <- | Minus |
arm_3R | 5216608..5216795 | 205..392 | 100 | <- | Minus |