FMO10363.5prime Sequence
1140 bp (1038 high quality bases) assembled on 2010-11-12
> FMO10363.5prime
CAGTCGACATGCACTGCGCTTTGTATAACTCGTGTCCGGTGGCACACAAA
CATCTGCCCACCCTGGACATTGAACCCAGTGACTATGTGCATGAAGTTCC
ACCTCCTGGCGAAATCGTGCGTCCTCCAATACAGTTGGGAGAGACATACT
ACGCTGTTAAGAACAAGGCTATTGCCAGCTGGGTGTCCATAAAGGTAATC
GAGTTTACAGAGAGCACCGCCATCAACGGAAACACGATGAAGAGCTACAA
GATTAGGTACCTCAACACTCCGTACCAGATGATCAAGACAGTGACGGCCA
AGCACATTGCCTACTTCGAACCACCGCCAGTGCGACTGACCATTGGTACC
CGCGTGATTGCGTACTTCGATGGCACCACTTTGTCGCGGGGCAAGGATAA
GGGCGTGGTGCAGAGCGCCTTTTATCCAGGCATCATCGCTGAGCCGTTGA
AGCAGGCCAATCGCTACCGCTACCTAATATTCTACGACGATGGGTACACT
CAGTACGTTCCGCACCGCGATGTCCGTCTAGTTTGCCAGGCTTCCGAGAA
AGTGTGGGAGGACGTACACGCCGCATCGCGCGATTTCATACAGAAGTACG
TGGAGAAGTACTCCGTGGATCGTCCCATGGTGCAATGCACCCGGGGACAA
AGTATGACCACTGAATCGAACGGGACCTGGCTGTACGCGCGCGTCATTGA
CATCGACTGCAGCTTGGTGTTGATGCAGTTTGAGGGCGACAAAAACCATA
CGGAGTGGATATACAGGGGTTCATTGCGCTTGGGTCCTGTCTTCAGGGAA
ACCCAGAACAATATGAACAGTTCAAGCGCACAGCAGCTGCGTGTCCCAAG
ACGCACGGAGCCCTTTATTCGGTACACCAAGGAGATGGAGTCCAGCAGCA
AGGTGACCAGCAGATGCGTGCCTTTGCCCGCAGAGCAGCGCCTCCGCCCA
AAATAACGCATTAGCGGCTGCATCTTCGGCAGCACCCCAGCCGGAGGACG
CACAATGCAAGGAGGTGTTCAGCACAGTAATAGCGCAGGTGCTGGTGCGA
CACCTTAAACAACTCGAACAATCTTACGTGACGAACGAGAAATGGCCAGG
CCCATGTTAGCCTACTTACGCAAGCGAAATCCTGCCTCCA
FMO10363.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:10:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
egg-RA | 3937 | CG12196-RA | 1349..2481 | 9..1139 | 5115 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:09:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24777467..24777973 | 851..345 | 2520 | 99.8 | Minus |
2R | 25286936 | 2R | 24778033..24778291 | 347..89 | 1295 | 100 | Minus |
2R | 25286936 | 2R | 24777192..24777408 | 1067..852 | 665 | 92.2 | Minus |
2R | 25286936 | 2R | 24778344..24778424 | 89..9 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:09:59 has no hits.
FMO10363.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:15:57 Download gff for
FMO10363.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
egg-RA | 1354..2449 | 1..1097 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:20:46 Download gff for
FMO10363.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
egg-RA | 1341..2436 | 1..1097 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:49:50 Download gff for
FMO10363.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
egg-RA | 1341..2436 | 1..1097 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:49:50 Download gff for
FMO10363.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24777164..24777408 | 852..1097 | 93 | <- | Minus |
2R | 24777467..24777972 | 346..851 | 99 | <- | Minus |
2R | 24778035..24778290 | 90..345 | 100 | <- | Minus |
2R | 24778344..24778432 | 1..89 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:20:46 Download gff for
FMO10363.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20664687..20664931 | 852..1097 | 93 | <- | Minus |
arm_2R | 20664990..20665495 | 346..851 | 99 | <- | Minus |
arm_2R | 20665558..20665813 | 90..345 | 100 | <- | Minus |
arm_2R | 20665867..20665955 | 1..89 | 95 | | Minus |