FMO10364.5prime Sequence
1117 bp (1005 high quality bases) assembled on 2010-11-12
> FMO10364.5prime
CAGTCGACATGAGTAGCGCTGCCGCGGCTGCTGCGGGTGCCGCTGGTGGA
GGAGCCCTGTTCCAACCACAATCGGTCAGCACGGCCAATAGCAGTAGTAG
TAACAATAACAATTCAAGCACACCGGCTGCTCTTGCCACCCATTCGCCCA
CGAGCAACTCACCAGTTTCGGGCGCCAGTTCGGCATCGTCCTTGTTGACG
GCCGCCTTTGGCAACCTGTTTGGTGGCTCCTCGGCCAAGATGCTGAACGA
GCTGTTTGGCCGCCAGATGAAGCAGGCCCAGGACGCAACGAGTGGCCTGC
CCCAGAGTTTGGACAACGCCATGCTGGCCGCCGCCATGGAGACGGCCACC
AGTGCCGAGCTGTTGATCGGCAGCCTCAATTCCACGTCCAAGTTGCTGCA
GCAGCAGCACAATAACAACAGCATTGCTCCCGCCAATAGCACGCCCATGA
GCAATGGCACAAATGCATCGATCTCGCCGGGATCGGCCCACAGTTCCAGT
CACTCGCATCAGGGAGTCTCGCCCAAAGGAAGTCGCAGGGTGTCGGCCTG
CAGTGATCGCTCCTTGGAGGCGGCAGCTGCTGATGTTGCTGGTGGCTCGC
CGCCACGAGCGGCATCGGTGAGCTCGCTGAACGGAGGAGCCAGCAGTGGG
GAGCAGCACCAGTCTCAGTTGCAACACGACCTGGTGGCACATCACATGCT
GCGCAATATACTGCAGGGCAAGAAGGAGCTGATGCAACTGGATCACGAGC
TGCGCACCGCCATGCAGCAGCAGCAACAGCAGCTGCAGGAGAAGAGCAAC
TGCACTCCAAGCTTAACAATAATAATAACAACAATATTGCTGCCACCGCC
CACAACAATAACAACACCACAATGGAGAGTATCAATCTGATCGACGATTC
GGAAATGGCTGACATCAAGATCAAGAGTGAGCCCCAGACGGCTCGCAGCC
ACAGCAATCGCCGCACGGAAGCAGCACAGCAGCCGAAGTGGGGAGCGGCA
GTGGGAGCAAGCAGCATGGCAGGCGATGGCAGCCTGGCGAACGCAGTTCC
TCGACTCCCTGACAGCCACGGGGCAGGACGAATGCCAGAACAAGAAAATG
CTGGCCCATTGCTAAGA
FMO10364.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:07:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pros-RM | 22289 | CG17228-RM | 2547..3655 | 8..1108 | 5040 | 97.8 | Plus |
| pros-RL | 5526 | CG17228-RL | 302..1410 | 8..1108 | 5040 | 97.8 | Plus |
| pros-RK | 7890 | CG17228-RK | 302..1410 | 8..1108 | 5040 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:07:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11373089..11374121 | 8..1036 | 4830 | 98.9 | Plus |
Blast to na_te.dros performed 2014-11-26 17:07:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6715..6880 | 705..873 | 214 | 65.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6672..6921 | 590..833 | 207 | 58.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..7120 | 652..1044 | 185 | 55 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6748..6916 | 718..885 | 183 | 61.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6691..6841 | 737..885 | 182 | 59.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2458 | 717..869 | 181 | 61.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6834 | 765..869 | 155 | 66.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6929 | 641..789 | 145 | 59.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6871 | 735..885 | 140 | 60.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1527..1664 | 735..886 | 132 | 61.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1090..1158 | 764..833 | 131 | 69 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2517..2677 | 654..810 | 130 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2813..2950 | 734..869 | 127 | 57.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1083..1180 | 721..823 | 124 | 62.1 | Plus |
FMO10364.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:15:29 Download gff for
FMO10364.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pros-RG | 1096..2192 | 1..1091 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:18:57 Download gff for
FMO10364.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pros-RK | 295..1391 | 1..1091 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:48:17 Download gff for
FMO10364.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pros-RK | 295..1391 | 1..1091 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:48:17 Download gff for
FMO10364.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11373082..11374178 | 1..1091 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:18:57 Download gff for
FMO10364.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7198804..7199900 | 1..1091 | 97 | | Plus |
