FMO10365.5prime Sequence
1143 bp (1030 high quality bases) assembled on 2010-11-12
> FMO10365.5prime
CAGTCGACATGCAAAACGATATGGTCAGCATACCGGTGGCCAATTTGAAC
GGCGGCCTTAAAGCGGCCAGCAGCGGTTCCGGAGTTGGTGTAGTGACCTC
CGGCGGCGTCGTATCCTCGGCGGTGCTGGCCAATGCCCCACGTGTATACC
TAACGCCCTCCTCCACATTCATGACCAATCGCCAAATGGCGGGAGTGGCG
TCCACCGGAAGAATGAGCGGACAAGTCGTCGGTGGTTCATCTGGCACAGC
CTCAACAGCCGGTACCGTTCGCTATTTTTCGCAATTCAGCAAAATGCAAA
CGGCCGGCGGACCCAGTTTGCAAAGGAAACTTGCCAACGGGGATACCATT
GTTCTGGCAACCGGCAGTAAAAATATGTTCCTTACTAGCAGCGAAAATAA
GGCTAATCTGCCGACCGTCGCCAGCAATGGCAATGGTCTGATCACAGCCA
AAATGGATCTATTGGAGGAGGAGGTCATGCAGTCGATAACTGTGATTGAT
GACGATGACGAGGAGAAAAAGGAAGTCGCTGAAGACGAAGAAGAGAGCAG
CAATAATGCCAAACCCATTGACCTTCACCAGCCAATTGCTGATAATGAGC
ACGAGCTGGACATTGTGATAAACAATGTGGTCTGCTCGTTTAGCGTCGGC
TGTCACCTGAAGCTGCGCGAAATTGCGCTGCAGGGATCAAATGTGGAGTA
CCGTCGCGAGAACGGAATGGTGACAATGAAGCTCCGCCATCCATACACCA
CTGCCTCGATTTGGTCGTCGGGGAGGATTACCTGCACTGGTGCCACTTCC
GAGTCAATGGCCAAAGTCGCTGCACGCCGCTATGCCAGATGCCTTGGCAA
GCTGGGATTTCCCACTCGTTTCCTCACTTTCGCATTGTCAACGTACTGGG
CACCTGCAGCATGCCGTGGCCATCAAGATCGTCAACTTTTCGGAGCGCCA
TCGCGAGAACGCCAGCTACGAGCCCGAGCTGCATCTGGAGTGACTTACAA
GATGCGCGATCCGATCCAAAGCCACCCTGAAGATCTTTCTCCACCGGCAG
CGTACAGTCACACGCGGGCTAGGCGTAAACACACGTGATCGCTATCCACC
AATATTACTCGCTGGTCTTGGATTCCGCAGCACGTCCGGCGGA
FMO10365.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:07:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trf2-RJ | 6934 | CG18009-RJ | 4016..5157 | 9..1143 | 5190 | 97.9 | Plus |
| Trf2-RE | 7131 | CG18009-RE | 4213..5354 | 9..1143 | 5190 | 97.9 | Plus |
| Trf2-RF | 9866 | CG18009-RF | 4132..5273 | 9..1143 | 5190 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:07:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8427087..8427888 | 9..810 | 4010 | 100 | Plus |
| X | 23542271 | X | 8427946..8428195 | 809..1054 | 940 | 97.2 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:07:42 has no hits.
FMO10365.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:15:30 Download gff for
FMO10365.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trf2-RE | 3250..4343 | 9..1098 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:18:59 Download gff for
FMO10365.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trf2-RF | 4132..5225 | 9..1098 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:48:18 Download gff for
FMO10365.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trf2-RF | 4132..5225 | 9..1098 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:48:18 Download gff for
FMO10365.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8427087..8427887 | 9..809 | 100 | -> | Plus |
| X | 8427947..8428205 | 810..1064 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:18:59 Download gff for
FMO10365.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8321120..8321920 | 9..809 | 100 | -> | Plus |
| arm_X | 8321980..8322238 | 810..1064 | 96 | | Plus |
