FMO10367.5prime Sequence
1135 bp (1003 high quality bases) assembled on 2010-11-12
> FMO10367.5prime
CAGTCGACATGCGGCACACCGGAAGTAGGGCGGAAATCGATATGCTGGAA
CGCGAGACAAGCAGTCAGATCAGGAACTTGGATGTCTCGGCCGGGGATTT
GCTGAGTCGCACCCACGAGGAGCTGGTCCTTTTGCTGATTCAGTTGAGGA
GACAGAGTAGCCAGACTGCCAGGGCCATCGAGCAGTGCTGCAGCGATATC
CATGATGTGCAGAATCGCCTGCGAAGTGCCGAGGGTTTGACCAGAGCCGA
GAGTATCCAGCGTTTGGACTACTTGAAGCAGCACCTTTTGGACCTGGAGC
GGCACTACGAGAAGAGCAAGCCGCTGGTCAATTTGGTGGACAACATGGTC
AAGTTGGGCTCACTGTATCGCAACGATGCAAACGGCAGGGTCCAACCAGC
CACACTGGATCGCCTGGAGTTCAATCAGCGGATGCAGGAGCAGCAAATGC
TGCAAGAGGAGCAGCAGCAGTGGGAGCGTCTCAGTCCCAATCAGGCAGAG
TTGCAGGCCAAGGTGCGTGAGCTCTACCAACTGGATCAGCTGCTGCAGGA
GGAGTCGGGCACTTTGCAGAGTTTGCAGCGGGACAAGGAAGATCTCGAGC
GAGCCTTGGGAGGATTGAGGGCTCGCATCCACGACAGCAATGCCACGCCC
ATGGCCCTGGAGGCGGCCAAGAAGCAGCAGCACATCCTGGAGCGTGAGCT
GTCGCGGGTTCATCAGCTTCTGGCCGAGAACTCTAAGAAACTGGAGCAGA
CAGTGGCGGGAAATGCTCGCCTGGAGCAGAGTTACTCCTTCTCCGTCAGA
AGGTACAAGCCGTTCGAGGATCCACCACCAATGGAATGAACGGTGATGGC
TTTCACATCAATGGTGACCAAACTGCCGCCGTTTTGGCCTCGGAATTGGA
GCGAGTGCAGTCCCTGGTGGCGATATGCAAGACAACGCCACGAACTCAGC
TTCGCAGTTCGCCAGCTGACGAGAACTCGACCAGGTTGTACCAGGAGATT
GGTAACAAGAGATGACCGCGGTGCCTCCACCAATGCAGTCTGAAGAGCGA
GCACTCACTGTGGACGAAACCGATTGATGCTATTGCCTGCATGCGATCCC
GCCGACAGTTGATGATCAATTGGAACTATCACTCC
FMO10367.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:07:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34383-RL | 6840 | CG34383-RL | 3993..5115 | 9..1112 | 5015 | 97.6 | Plus |
CG34383-RK | 9215 | CG34383-RK | 4330..5452 | 9..1112 | 5015 | 97.6 | Plus |
CG34383-RJ | 10048 | CG34383-RJ | 5163..6285 | 9..1112 | 5015 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:07:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13757180..13757477 | 210..507 | 1490 | 100 | Plus |
3R | 32079331 | 3R | 13758456..13758773 | 736..1046 | 1180 | 96.5 | Plus |
3R | 32079331 | 3R | 13757551..13757783 | 505..737 | 1165 | 100 | Plus |
3R | 32079331 | 3R | 13756889..13757027 | 74..212 | 695 | 100 | Plus |
3R | 32079331 | 3R | 13756597..13756662 | 9..74 | 330 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 17:07:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 599..688 | 515..424 | 139 | 65.6 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1062..1164 | 439..541 | 128 | 62.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6742..6840 | 370..469 | 119 | 60.4 | Plus |
FMO10367.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:15:31 Download gff for
FMO10367.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34383-RF | 4233..5300 | 1..1057 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:19:04 Download gff for
FMO10367.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34383-RJ | 5154..6221 | 1..1057 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:48:23 Download gff for
FMO10367.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34383-RJ | 5154..6221 | 1..1057 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:48:23 Download gff for
FMO10367.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13756588..13756662 | 1..74 | 94 | -> | Plus |
3R | 13756890..13757027 | 75..212 | 100 | -> | Plus |
3R | 13757183..13757476 | 213..506 | 100 | -> | Plus |
3R | 13757553..13757783 | 507..737 | 100 | -> | Plus |
3R | 13758458..13758787 | 738..1057 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:19:04 Download gff for
FMO10367.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9583275..9583505 | 507..737 | 100 | -> | Plus |
arm_3R | 9582310..9582384 | 1..74 | 94 | -> | Plus |
arm_3R | 9582612..9582749 | 75..212 | 100 | -> | Plus |
arm_3R | 9582905..9583198 | 213..506 | 100 | -> | Plus |
arm_3R | 9584180..9584509 | 738..1057 | 95 | | Plus |