Clone FMO10367 Report

Search the DGRC for FMO10367

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:103
Well:67
Vector:pMK33-CFH-BD
Associated Gene/Transcript
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10367.5prime Sequence

1135 bp (1003 high quality bases) assembled on 2010-11-12

> FMO10367.5prime
CAGTCGACATGCGGCACACCGGAAGTAGGGCGGAAATCGATATGCTGGAA
CGCGAGACAAGCAGTCAGATCAGGAACTTGGATGTCTCGGCCGGGGATTT
GCTGAGTCGCACCCACGAGGAGCTGGTCCTTTTGCTGATTCAGTTGAGGA
GACAGAGTAGCCAGACTGCCAGGGCCATCGAGCAGTGCTGCAGCGATATC
CATGATGTGCAGAATCGCCTGCGAAGTGCCGAGGGTTTGACCAGAGCCGA
GAGTATCCAGCGTTTGGACTACTTGAAGCAGCACCTTTTGGACCTGGAGC
GGCACTACGAGAAGAGCAAGCCGCTGGTCAATTTGGTGGACAACATGGTC
AAGTTGGGCTCACTGTATCGCAACGATGCAAACGGCAGGGTCCAACCAGC
CACACTGGATCGCCTGGAGTTCAATCAGCGGATGCAGGAGCAGCAAATGC
TGCAAGAGGAGCAGCAGCAGTGGGAGCGTCTCAGTCCCAATCAGGCAGAG
TTGCAGGCCAAGGTGCGTGAGCTCTACCAACTGGATCAGCTGCTGCAGGA
GGAGTCGGGCACTTTGCAGAGTTTGCAGCGGGACAAGGAAGATCTCGAGC
GAGCCTTGGGAGGATTGAGGGCTCGCATCCACGACAGCAATGCCACGCCC
ATGGCCCTGGAGGCGGCCAAGAAGCAGCAGCACATCCTGGAGCGTGAGCT
GTCGCGGGTTCATCAGCTTCTGGCCGAGAACTCTAAGAAACTGGAGCAGA
CAGTGGCGGGAAATGCTCGCCTGGAGCAGAGTTACTCCTTCTCCGTCAGA
AGGTACAAGCCGTTCGAGGATCCACCACCAATGGAATGAACGGTGATGGC
TTTCACATCAATGGTGACCAAACTGCCGCCGTTTTGGCCTCGGAATTGGA
GCGAGTGCAGTCCCTGGTGGCGATATGCAAGACAACGCCACGAACTCAGC
TTCGCAGTTCGCCAGCTGACGAGAACTCGACCAGGTTGTACCAGGAGATT
GGTAACAAGAGATGACCGCGGTGCCTCCACCAATGCAGTCTGAAGAGCGA
GCACTCACTGTGGACGAAACCGATTGATGCTATTGCCTGCATGCGATCCC
GCCGACAGTTGATGATCAATTGGAACTATCACTCC

FMO10367.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:07:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG34383-RL 6840 CG34383-RL 3993..5115 9..1112 5015 97.6 Plus
CG34383-RK 9215 CG34383-RK 4330..5452 9..1112 5015 97.6 Plus
CG34383-RJ 10048 CG34383-RJ 5163..6285 9..1112 5015 97.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:07:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13757180..13757477 210..507 1490 100 Plus
3R 32079331 3R 13758456..13758773 736..1046 1180 96.5 Plus
3R 32079331 3R 13757551..13757783 505..737 1165 100 Plus
3R 32079331 3R 13756889..13757027 74..212 695 100 Plus
3R 32079331 3R 13756597..13756662 9..74 330 100 Plus
Blast to na_te.dros performed 2014-11-26 17:07:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 599..688 515..424 139 65.6 Minus
roo 9092 roo DM_ROO 9092bp 1062..1164 439..541 128 62.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6742..6840 370..469 119 60.4 Plus

FMO10367.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:15:31 Download gff for FMO10367.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34383-RF 4233..5300 1..1057 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:19:04 Download gff for FMO10367.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34383-RJ 5154..6221 1..1057 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:48:23 Download gff for FMO10367.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34383-RJ 5154..6221 1..1057 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:48:23 Download gff for FMO10367.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13756588..13756662 1..74 94 -> Plus
3R 13756890..13757027 75..212 100 -> Plus
3R 13757183..13757476 213..506 100 -> Plus
3R 13757553..13757783 507..737 100 -> Plus
3R 13758458..13758787 738..1057 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:19:04 Download gff for FMO10367.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9583275..9583505 507..737 100 -> Plus
arm_3R 9582310..9582384 1..74 94 -> Plus
arm_3R 9582612..9582749 75..212 100 -> Plus
arm_3R 9582905..9583198 213..506 100 -> Plus
arm_3R 9584180..9584509 738..1057 95   Plus