FMO10368.5prime Sequence
1131 bp (993 high quality bases) assembled on 2010-11-12
> FMO10368.5prime
CAGTCGACATGCTGAATCCGACCGAGCCGCAGCCAGTGCCACTATTCCTG
CCCGCTCATCTGAACAACAAGCCCATCTGCGACGACATCATCCGCAAGTT
CTCACCCTCGAGGCGCCTGGAGTCGCGAGAACTCGCCAAGCTTCTCGCCC
AGCCGCATTTTCGTGCTCTTTTGCGCGCCCATGATGAGATAGGAGCACTC
TACGAGCAACGACTTAAAGCTGCCGGGGGATCCACCAGCCAACTAGAGAT
CGCCAGCCAACGCCAAACGGGAGGCTACCTGTTCACCGAGGACGTCCTCA
ACACCAAGATGCCAGTGGAGACCATCAAGATGGTGGGTCTGCGCCGAGAT
CCCAGCAAGCCGCTGGGCCTGACCGTCGAACTGGACGAATTCAAGCAGCT
GGTCGTGGCCAGGATTCTGGCGGGCGGGGTGATCGACAAACAGAGCATGC
TGCACGTTGGCGATGTCATCCTAGAGGTGAACGGTACGCCCGTTCGCACT
CCCGATGAGCTGCAGGTGGAGGTGTCGCGGGCCAAGGAGAATCTCACCCT
CAAGATCGGGCCGAACGTGGACGAGGAGATCAAGAGCGGTCGCTATACTT
GCTACATGCGTGCCCTTTTCACATACAATCCATCCGAAGATTCCTTGCTG
CCATGCAGGGATATTGGATTGCCCTTCAAGTCGGGCGACATTTTGCAGAT
CATCAACGTAAAGGATCCCAACTGGTGGCAGGCCAAGAACATTACTGCCG
AATCTGACAAAATTGGACTCATACCATCCCAAGAGCTGGAGGAGCGGCGC
AAAGCCTTCGTGGCCCCCGAGGCGGACTACGTTCACAAGATTGGCATTTG
CGGAACAAGAATCTCGAAGCGAAAGCGCAAGACCATGTACCGATCTGTGC
CAATTGCGAGTTCGACAAGGCGGAGCTGCTGCTCTATGAGAGGTCACGCG
GATGCCGCCGTTCCGCAGAAACCCTGGTTCTCATCGTGTTTCCGGTGTGG
AAGACGTACGCTCAGAATCGGCTGATCACAGCGATGTGGACAAGTTCGGA
CGGTCATTCTAATACCAGTCGCCCTAAGCCCGCCTTTGAGGAAACGCAGT
AGCTACTGTTCATGACCGCAGAATGGAAAGC
FMO10368.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:07:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vari-RD | 2717 | CG9326-RD | 486..1610 | 9..1119 | 5195 | 98.2 | Plus |
| vari-RE | 2535 | CG9326-RE | 486..1076 | 9..599 | 2940 | 99.8 | Plus |
| vari-RB | 2610 | CG9326-RB | 486..1076 | 9..599 | 2940 | 99.8 | Plus |
| vari-RE | 2535 | CG9326-RE | 1140..1673 | 600..1119 | 2255 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:07:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20791230..20791664 | 599..165 | 2175 | 100 | Minus |
| 2L | 23513712 | 2L | 20790391..20790558 | 860..693 | 840 | 100 | Minus |
| 2L | 23513712 | 2L | 20792113..20792267 | 165..11 | 760 | 99.4 | Minus |
| 2L | 23513712 | 2L | 20790138..20790335 | 1050..861 | 610 | 95.5 | Minus |
| 2L | 23513712 | 2L | 20790622..20790720 | 698..600 | 495 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:07:51 has no hits.
FMO10368.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:15:32 Download gff for
FMO10368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vari-RD | 484..1615 | 9..1129 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:19:07 Download gff for
FMO10368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vari-RD | 486..1617 | 9..1129 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:48:25 Download gff for
FMO10368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vari-RD | 486..1617 | 9..1129 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:48:25 Download gff for
FMO10368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20790391..20790552 | 699..860 | 100 | <- | Minus |
| 2L | 20790622..20790720 | 600..698 | 100 | <- | Minus |
| 2L | 20790125..20790335 | 861..1061 | 94 | <- | Minus |
| 2L | 20791230..20791664 | 165..599 | 100 | <- | Minus |
| 2L | 20792114..20792274 | 1..164 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:19:07 Download gff for
FMO10368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20790125..20790335 | 861..1061 | 94 | <- | Minus |
| arm_2L | 20790391..20790552 | 699..860 | 100 | <- | Minus |
| arm_2L | 20790622..20790720 | 600..698 | 100 | <- | Minus |
| arm_2L | 20791230..20791664 | 165..599 | 100 | <- | Minus |
| arm_2L | 20792114..20792274 | 1..164 | 96 | | Minus |
