FMO10380.5prime Sequence
596 bp (596 high quality bases) assembled on 2010-11-12
> FMO10380.5prime
CAGTCGACATGATCAATGAGCTATCCGCTCCTAAGCTTAAGCTTGTATTC
ATTAATGTATTTTCGATTTTGCACAGTACCACTTATTTGAATGTGTACCG
CTTATATGCAGACTTAAAAAATGTTAAAGCTGGCGTGGATGGGTCTAATG
AGGAGCTTTGGATCAGGGAAATCTTTACATTCCTCATCAGTGCTCTCATA
GTGATTCGCTTTTGTCTATGCTTCGTAGGATTGGCTTCTAACATTGTGGC
CATATACCCAATTCTAACAAATTCGCAAGCTGAGATGCTTATGCCTACCA
TTATAGTGCAGGCCATTGACAAAGTCATTCTAAATCTATACGAGATTATT
TTGGGCTACGGCAGCTTGTGCTATCTCTATCCTGAAAGTACGGCTGTTTT
CATCTTCTTCCTTATACAGATGGGAGCCAAGATTGTCTGCAGCATCTCTG
TCTTGAATATTTATTCGGACCATCACGATCACTTGGCAACTCTAGTTTCC
TTCAACGAGGAATCACATAGCTTGGGACCAGACAGTGTAGAAGAAATCGA
ATTGGGGAACCAAAACTTGGATTTTTCCGCAAGCTTTCTAGACCAT
FMO10380.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:08:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34307-RB | 718 | CG34307-RB | 76..645 | 9..578 | 2835 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:08:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11897657..11897901 | 9..253 | 1225 | 100 | Plus |
| 3R | 32079331 | 3R | 11897961..11898162 | 254..455 | 1010 | 100 | Plus |
| 3R | 32079331 | 3R | 11898223..11898346 | 455..578 | 605 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:08:16 has no hits.
FMO10380.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:15:38 Download gff for
FMO10380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34307-RA | 74..521 | 6..454 | 99 | -> | Plus |
| CG34307-RA | 583..711 | 455..585 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:19:27 Download gff for
FMO10380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34307-RB | 74..650 | 6..585 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:48:45 Download gff for
FMO10380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34307-RB | 74..650 | 6..585 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:48:45 Download gff for
FMO10380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11897655..11897901 | 6..253 | 99 | -> | Plus |
| 3R | 11897961..11898161 | 254..454 | 100 | -> | Plus |
| 3R | 11898223..11898351 | 455..585 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:19:27 Download gff for
FMO10380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7723377..7723623 | 6..253 | 99 | -> | Plus |
| arm_3R | 7723683..7723883 | 254..454 | 100 | -> | Plus |
| arm_3R | 7723945..7724073 | 455..585 | 96 | | Plus |
