FMO10381.5prime Sequence
1152 bp (968 high quality bases) assembled on 2010-11-12
> FMO10381.5prime
CAGTCGACATGTATCACCTGAAGATCAACCCTAAGGAGTACTCCGAGCAC
GAGCTGGAGAAGATCACCCGTCGCTTCACCCTTGAGTTGGCCAAGAAGGG
CTTCATTGGACCCGGTGTCGATGTGCCCGCCCCCGACATGGGAACCGGTG
AGCGCGAGATGTCCTGGATTGCCGATACTTATGCCAAGACCATCGGTCAC
CTGGACATCAATGCTCATGCCTGTGTCACCGGCAAGCCCATCAACCAGGG
CGGTATCCACGGACGCGTCTCGGCCACCGGTCGCGGTGTCTTCCACGGCC
TGGAGAACTTCATCAACGAGGCCAACTACATGAGCCAGATCGGCACCACT
CCCGGCTGGGGCGGCAAGACCTTCATCGTCCAGGGCTTCGGTAACGTGGG
CCTGCACACCACTCGCTATCTGACCCGCGCCGGAGCCACCTGCATCGGTG
TCATTGAGCACGACGGCACTCTGTACAACCCGGAGGGCATTGACCCTAAG
CTGCTGGAGGACTACAAGAACGAGCACGGCACCATTGTGGGCTACCAGAA
CGCCAAGCCCTACGAGGGCGAGAACCTCATGTTCGAGAAGTGCGACATCT
TCATTCCCGCTGCCGTCGAGAAGGTCATCACCAGCGAGAATGCCAACCGC
ATTCAAGCTAAGATCATTGCCGAGGCTGCCAACGGCCCCACCACCCCCGC
TGCCGACAAGATCCTCATCGATCGCAACATCCTGGTCATTCCCGATCTGT
ACATCAACGCCGGTGGTGTCACCGTCTCCTTCTTCGAGTGGCTGAAGAAC
CTGAACCACGTCTCGTACGGTCGCCTGACCTTCAAGTATGAGCGCGAGTC
CACTACCATCTGCTTGAATCCGTTCAAGAGTCCCTGGAGCGTCGCTTCGG
CCGTGTGGGCGGTCGCATCCCCGTGACCCCCTCCGAGTCGTTCAGAGCGC
ATCTCCGGCGCCTCGAAAGATTTCGTGCACCCCGCCTGACTACACCATGG
AGCGCTCGCCCGCGCCATCATGAAGACGCCATGAAGTACAACTGGGGCTG
ACCTCGAACCGCTGCCTACGTCCACCTCCAATGGAAAGATCTACACATAC
CGCGAGGCCGGCTGGCTGCCAGCTTCAGAACATTCGTTGGCGCCGGCCAG
GT
FMO10381.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:08:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gdh-RD | 1796 | CG5320-RD | 259..1368 | 18..1112 | 5025 | 97.7 | Plus |
| Gdh-RF | 2156 | CG5320-RF | 619..1728 | 18..1112 | 5025 | 97.7 | Plus |
| Gdh-RB | 1835 | CG5320-RB | 259..1124 | 18..882 | 4230 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:08:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23938120..23938445 | 343..18 | 1630 | 100 | Minus |
| 3R | 32079331 | 3R | 23937732..23938052 | 662..342 | 1605 | 100 | Minus |
| 3R | 32079331 | 3R | 23937423..23937629 | 866..661 | 985 | 99.5 | Minus |
| 3R | 32079331 | 3R | 23936428..23936646 | 1072..866 | 520 | 90 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:08:19 has no hits.
FMO10381.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:15:38 Download gff for
FMO10381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gdh-RE | 64..1195 | 1..1116 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:19:30 Download gff for
FMO10381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gdh-RF | 625..1733 | 24..1116 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:48:47 Download gff for
FMO10381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gdh-RF | 625..1733 | 24..1116 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:48:47 Download gff for
FMO10381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23937423..23937627 | 663..866 | 99 | <- | Minus |
| 3R | 23937732..23938051 | 343..662 | 100 | <- | Minus |
| 3R | 23938121..23938445 | 18..342 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:19:30 Download gff for
FMO10381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19763145..19763349 | 663..866 | 99 | <- | Minus |
| arm_3R | 19763454..19763773 | 343..662 | 100 | <- | Minus |
| arm_3R | 19763843..19764167 | 18..342 | 100 | | Minus |
