FMO10383.5prime Sequence
1113 bp (1027 high quality bases) assembled on 2010-11-12
> FMO10383.5prime
CAGTCGACATGTCGTTGCGCAGCAACAAGTTGCACAGCCAACAGTCGACG
GCCAGCAGCAACAGCAACGGCAGCAACAGTAGCGGCAACAGCGGCAGCAA
CAGCAACGTGCAGCAGCAACATCCACCGATGGCGTACCAGCAGCAGCAGC
AACAACTGCTGCAACAGCTGCAGCAGCAGCAGAAGTTCCAGGCGCAGCAG
CGGGGCAACACCAGTCGCAATAATCTGGCCACATTGGTGGCGGCCATCAA
TGGACACGACGGCGGTCAGAACTCACCCGGCAACAGTGGCTATCAATTGT
CACCCGCTGCGGCCTCCAGGGTGGCCCATGCTCCGCCCCACTCGCCGCTG
GGTCCACCCTCATACTCAGCGGCCACCGCTCAGTCCGCCTTCAGCTACTA
CGGACAACATCAGCAGCATCAGATGCAACTGAATCACAATTACCAGCAAC
AGCAGCAGCAACAGTTTCAGTTGCAGCAGCAACAGCAGCAGCTGCAGCTA
CCACCGCCCGATCTCACCGATGGCATCGATCATCCCTCCGCCCAGGCTGC
CACGCCGCCGGACTCGCCAAACGCCCAGTCCACTGGCCCATCGGATCTGG
AGCAGCAGCTCTGTGTGGTCGCCAAGATGCAGAAGTCGGTGACCATAACA
GTCACGCCGCAGCGCAGCAACTCCATGGACTTCCTCAACTTCGAGGAGAA
GCGTCAGCTCATCGCCTCGTCGTTATCCTTATCGGATATCCTGCACAGCA
GCAACGCGCAGCAGCAGCAGCAGCAGGCGGCCAAGGATGGACTGGCCATT
AACGGGGGGCAGTGCGCTAAGAAACAGAATGAGCTGCCATACGCACAAAT
AGCCTGGTTCGGGCACTAGACGCCACCTTTGGAAAGGAGAGCAACTCAGT
GCCCTGGGCAGATTCTTTAAGCCCTGAAATGGCGACGGAAAAAGAAGAGC
GAGAAGTTCGAGGCGCCTCAAATCCCTGGAGCGTAGGATTTCTGTGCGTG
CATCGTGATGAGCTATGCAAAGGGATTCTAATGCCTGAAAGTTCCCTGGC
ATATTCCCGACCAGGCGAGGAGTCGGTATATAACACACGCAAATTGGACA
CCCGCAATGGATT
FMO10383.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:08:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32264-RE | 3764 | CG32264-RE | 592..1685 | 8..1085 | 4985 | 98 | Plus |
| CG32264-RD | 3788 | CG32264-RD | 586..1679 | 8..1085 | 4985 | 98 | Plus |
| CG32264-RM | 3767 | CG32264-RM | 1403..1688 | 816..1085 | 945 | 92.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:08:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3780418..3781231 | 821..8 | 4055 | 99.9 | Minus |
| 3L | 28110227 | 3L | 3769252..3769407 | 965..816 | 480 | 96.2 | Minus |
Blast to na_te.dros performed 2014-11-26 17:08:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2435..2539 | 391..496 | 212 | 67.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2499 | 367..534 | 183 | 61.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6854..6944 | 392..486 | 150 | 65.3 | Plus |
FMO10383.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:15:40 Download gff for
FMO10383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32264-RF | 585..1692 | 1..1092 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:19:34 Download gff for
FMO10383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32264-RD | 579..1686 | 1..1092 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:48:49 Download gff for
FMO10383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32264-RD | 579..1686 | 1..1092 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:48:49 Download gff for
FMO10383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3769242..3769406 | 817..973 | 95 | <- | Minus |
| 3L | 3780423..3781235 | 1..816 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:19:34 Download gff for
FMO10383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3769242..3769406 | 817..973 | 95 | <- | Minus |
| arm_3L | 3780423..3781235 | 1..816 | 99 | | Minus |
