FMO10386.5prime Sequence
1118 bp (989 high quality bases) assembled on 2010-11-12
> FMO10386.5prime
CAGTCGACATGAAGTCTGTCATTCTATATCCATATGGACCGCTAACCGGC
GGCACACGTTGCTGTCGCATGTTGCATGCCAAAAATTTGGCCATAACAAG
TGCAATTTACACAATTAATATATCACTCCTAATCGTACTGATATACTCGT
GGCGCATAAATGTCAATATGCATAAGTCGGCCGATCTGCAGGATGTCTAC
TACGGTGTGCAAATAGCATATTTTGCCATAATCGGCACACAAATGTCCAT
GATACTGCTGAGCATTGTGTTAATATTTGGAATATGTCGGGAGAACCCAG
GACTAATTGTACCCTGGATAATTGGCTATATAACATTTATGGCCCTGGAA
GCTGTCGCCATGGTCTACTCCAATGTCCTGCGCGACCATGTAAATAAGCA
ATTCGACGCAATGTGCAAGGCCGAGGTGGCATTCTTTATTGCTCGTGCAC
TGATAAATGTGCTGGCCATGTGGGGAGTGCTCCGTTTCTACAACTTGGTT
CGTTCTGGAATCACATGGCGCGGACCAGAGGCCAAGACAGCCATCTTTGC
GCCGATGTACAAGAGTGTTACTACGAATAAGCCGCACACATACACCTACA
GCAAGCGGTCAAGGCGCCGCCATAGCATCGATTCGACTTCCGGCGGATGC
TGCGCCATCTTCGACTTTGACTTCGAGTACGACGATGATAACGACGACGA
CGACGATGAGGCTGCCTATGGCGATGGTCTGGATACGGAGGACGAAGTGG
GCTACGACTACGATGATTACTACGATTACTACGACGACGACGAGCTGGCG
GAGCAGCAGCACTTGGGGCTGCAACAGGACGATGGTGACTGTAGCATGTT
GGGCGCTGGCAGGGCAACCAGATCGCGCTCCAAGCCAAGATCCGCTGTGG
TCAAGTCAAGGTCAGCGGAGCGGAAGTCGCCCGCACCAACACAACATCGC
AGCGTGCTGATCAACAAGCGGCACACCAGTACAAAATCGCCGCGGTCCAA
CGCAGCTGGAGTCATCACGATCGGAAAAAGCGCCGGGGAGCGGCACATGA
AATGATCGCTTTGTTGCTATGAAAGCAGTCGCCCTTGGCTCAGTGCAAGC
TCTAGACATTCGTTGGGC
FMO10386.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:08:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32204-RB | 2989 | CG32204-RB | 494..1538 | 9..1045 | 4855 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:08:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18923929..18924394 | 990..529 | 2020 | 98.5 | Minus |
| 3L | 28110227 | 3L | 18928150..18928258 | 398..290 | 545 | 100 | Minus |
| 3L | 28110227 | 3L | 18932758..18932865 | 116..9 | 540 | 100 | Minus |
| 3L | 28110227 | 3L | 18930589..18930678 | 206..117 | 450 | 100 | Minus |
| 3L | 28110227 | 3L | 18930064..18930151 | 291..204 | 440 | 100 | Minus |
| 3L | 28110227 | 3L | 18924703..18924775 | 531..459 | 365 | 100 | Minus |
| 3L | 28110227 | 3L | 18926178..18926241 | 460..397 | 320 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 17:08:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 5326..5410 | 183..97 | 123 | 63.2 | Minus |
FMO10386.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:15:41 Download gff for
FMO10386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32204-RB | 492..1557 | 9..1062 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:19:40 Download gff for
FMO10386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32204-RB | 494..1559 | 9..1062 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:48:53 Download gff for
FMO10386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32204-RB | 494..1559 | 9..1062 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:48:53 Download gff for
FMO10386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18923849..18924392 | 531..1062 | 95 | <- | Minus |
| 3L | 18924704..18924775 | 459..530 | 100 | <- | Minus |
| 3L | 18926180..18926239 | 399..458 | 100 | <- | Minus |
| 3L | 18928150..18928257 | 291..398 | 100 | <- | Minus |
| 3L | 18930065..18930150 | 205..290 | 100 | <- | Minus |
| 3L | 18930591..18930678 | 117..204 | 100 | <- | Minus |
| 3L | 18932758..18932865 | 9..116 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:19:40 Download gff for
FMO10386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18916949..18917492 | 531..1062 | 95 | <- | Minus |
| arm_3L | 18917804..18917875 | 459..530 | 100 | <- | Minus |
| arm_3L | 18919280..18919339 | 399..458 | 100 | <- | Minus |
| arm_3L | 18921250..18921357 | 291..398 | 100 | <- | Minus |
| arm_3L | 18923165..18923250 | 205..290 | 100 | <- | Minus |
| arm_3L | 18923691..18923778 | 117..204 | 100 | <- | Minus |
| arm_3L | 18925858..18925965 | 9..116 | 100 | | Minus |
