FMO10391.5prime Sequence
1139 bp (1029 high quality bases) assembled on 2010-11-12
> FMO10391.5prime
CAGTCGACATGTTGGCGAGATGTGTTTTGTTCGTCACTTGGCTGGCGGTT
TTCATTGCGACTGGAAAAAGTGACGATCAGTTGATGAAGCTCCCCGCCTG
CGCCGCCAAACAGGGAGAGTGCGATGATAACGAGGGTCCCGTCTGCGGCA
CCGATGGCCAAACCTATCCCACCAGGTGTCATCTGCTGCGGGCGCAGTGC
GGTGGCCACCAGGTGAGCCTCAAGTACAGCGGCTCCTGCAATGCCTGCCT
GGAGGCGGTGAAATTTGCCCGTCGTCAGCAGGAGCGAGATCCCGGATACT
TTGTGCCCCGATGCAGGAAGGATGGCAACTTTGCGGCTATGCAGTGCTAC
GGGAACAACGGATGCTGGTGCAGCGACAGTCAGGGCAGGCCCATCGCGGA
TGATAACAAGCAATTCCGGCGAAAGGGAAAGCTGCGCTGCAGGGCCAATC
GACGTGACCGACGCCGCCTGGCATCGCATCAGATTGGCTACAATCCGGAT
ACATCTGCGTCCAAAGGCAGTTCGGAGGCAGGATCAACAGCCCACCGGAC
TTGCAGCAAGTCCGATCGGTCGCAATTCAACACCAACCTGATGAGGATGT
TCCGGAACGAGGCTCAGAGCTTTTTCCGCCAGCCATCTCTCTCGGATTCC
CACATCCTGGAGTGGCAGTTCTCCAAGCTGGACACGAATGGCAACAAGTT
GCTCGATCGTCAGGAGATTCGGGAGCTGAAGAAGTACTCAGGCGGAACGT
TAAACCTCGTCGTTGTGGACGGACCTTTGGTAAATACTGTGATGTAACCA
AGGATGCCAATCTCAATTGGTTGGAATGGAGCGTCTGCTTTACCAAGGAG
TTTCACAACCGTAGTGCTGTCGTAAATCTTCTGGCGAGCAGTGCAGCCAC
CGCACACACACTCCACCCACTACAGCATCCACACACCAACGTCAATGGCC
ACCACCGAGGTCCCACCAATACCATTGGCACTGGAGTTAATCCACACCTT
ATATTCCGAGATGCGAGTGCAGTGAGGAGCCACGAGACCACTACGAGGAC
GTGCCACGGCTTACGGAGGTGAAGAGGAACGACTCGCAAGGAACAGATCT
GCCTGTTCCCGACGCAATCCCATCATTTATATATGGCTT
FMO10391.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:08:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| magu-RD | 2710 | CG2264-RD | 316..1449 | 9..1135 | 5180 | 97.9 | Plus |
| magu-RB | 2838 | CG2264-RB | 444..1577 | 9..1135 | 5180 | 97.9 | Plus |
| magu-RA | 2994 | CG2264-RA | 600..1733 | 9..1135 | 5180 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:08:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10060686..10061189 | 243..745 | 2470 | 99.8 | Plus |
| 2R | 25286936 | 2R | 10060222..10060382 | 83..243 | 805 | 100 | Plus |
| 2R | 25286936 | 2R | 10061618..10061864 | 861..1103 | 685 | 91.6 | Plus |
| 2R | 25286936 | 2R | 10061249..10061366 | 745..862 | 590 | 100 | Plus |
| 2R | 25286936 | 2R | 10057269..10057343 | 9..83 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:08:41 has no hits.
FMO10391.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:15:43 Download gff for
FMO10391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2264-RA | 565..1698 | 1..1127 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:19:49 Download gff for
FMO10391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| magu-RA | 593..1726 | 1..1127 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:48:59 Download gff for
FMO10391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| magu-RA | 593..1726 | 1..1127 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:48:59 Download gff for
FMO10391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10057262..10057343 | 1..83 | 96 | -> | Plus |
| 2R | 10060223..10060382 | 84..243 | 100 | -> | Plus |
| 2R | 10060687..10061189 | 244..745 | 99 | -> | Plus |
| 2R | 10061250..10061364 | 746..860 | 100 | -> | Plus |
| 2R | 10061618..10061891 | 861..1127 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:19:49 Download gff for
FMO10391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5944767..5944848 | 1..83 | 96 | -> | Plus |
| arm_2R | 5947728..5947887 | 84..243 | 100 | -> | Plus |
| arm_2R | 5948192..5948694 | 244..745 | 99 | -> | Plus |
| arm_2R | 5948755..5948869 | 746..860 | 100 | -> | Plus |
| arm_2R | 5949123..5949396 | 861..1127 | 92 | | Plus |
