Clone FMO10392 Report

Search the DGRC for FMO10392

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:103
Well:92
Vector:pMK33-CFH-BD
Associated Gene/Transcriptheph-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10392.5prime Sequence

1151 bp (1045 high quality bases) assembled on 2010-11-12

> FMO10392.5prime
CAGTCGACATGATGTCCTGCCCCATTCCCATGCCAATGCCAATTTCTTCA
TTACACAAATCAGAATTTGAACCGGTTAATATTGGAGTTAAGCGCGGAAG
CGACGAACTTTTGAGTCAAGCAGCGGTCATGGCGCCCGCTTCCGACAATA
ACAATCAGGACCTGGCCACAAAGAAGGCCAAACTGGAGCCGGGCACTGTG
CTGGCCGGCGGAATTGCCAAGGCCTCAAAAGTCATCCACTTGCGCAACAT
TCCGAACGAGTCCGGCGAGGCAGATGTGATTGCCCTGGGCATTCCGTTTG
GACGTGTGACCAACGTGCTGGTGCTCAAGGGCAAGAACCAGGCTTTCATC
GAGATGGCCGACGAGATCTCCGCAACGTCAATGGTGTCCTGTTACACAGT
AACTCCGCCCCAGATGCGCGGCCGCATGGTCTACGTGCAGTTTTCTAATC
ATCGCGAACTAAAGACGGACCAAGGTCACAACAACTCGACCGCCCATAGC
GACTACAGCGTCCAGTCCCCGGCGAGCGGATCGCCTCTGCCCCTTAGCGC
CGCTGCCAACGCGACCAGCAACAATGCAAACAGCTCAAGCGACAGCAACA
GCGCCATGGGAATCTTACAAAACACAAGCGCCGTCAATGCGGGCGGCAAC
ACCAACGCTGCCGGGGGACCCAATACTGTGCTCCGTGTGATTGTCGAGTC
CTTGATGTACCCCGTCTCGCTGGACATACTGCACCAGATCTTCCAGCGCT
ACGGCAAGGTGCTGAAGATTGTCACCTTCACAAAGAACAATTCATTCCAG
GCCCTCATCCAATATCCGGACGCCAATTCCGCCCAGCACGCCAAGTCGCT
CCTGGACGGCAGAATATATACACGGTTGCTGCACGTTGCGTATTGATAAC
AGCAAGCTGACGGCTCTGAATGTAAGTACAACAACGACAATCGCCGCGAC
TTCCCTAACCCCGCTCTGCCACTGTGAACCGGGAGTGATATTCATGCCCA
CCGCCGCGACTGATGAACACAATGATTTGCTTTTGATCGCCGCCCGTCAG
CGACTTCTCTTCTTCAGGTGATTAAATAGTCAACGACTGGGCGCCCCCGG
AGTCTCTGCCGCCTTGGCTGGCTGGCACTCCATGACCGTGATACAAACGC
C

FMO10392.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:08:45
Subject Length Description Subject Range Query Range Score Percent Strand
heph-RV 3128 CG31000-RV 930..2042 8..1113 5120 98.2 Plus
heph-RP 2592 CG31000-RP 394..1506 8..1113 5120 98.2 Plus
heph-RN 7366 CG31000-RN 671..1783 8..1113 5120 98.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:08:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31866118..31866436 801..483 1595 100 Minus
3R 32079331 3R 31873834..31874100 482..216 1335 100 Minus
3R 32079331 3R 31865775..31866038 1054..799 825 92.8 Minus
3R 32079331 3R 31881748..31881873 216..91 630 100 Minus
3R 32079331 3R 31959035..31959119 92..8 425 100 Minus
Blast to na_te.dros performed on 2014-11-26 17:08:44 has no hits.

FMO10392.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:15:44 Download gff for FMO10392.5prime
Subject Subject Range Query Range Percent Splice Strand
heph-RM 1179..1269 1..91 96 -> Plus
heph-RM 1308..2341 92..1118 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:19:50 Download gff for FMO10392.5prime
Subject Subject Range Query Range Percent Splice Strand
heph-RN 664..1789 1..1118 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:49:02 Download gff for FMO10392.5prime
Subject Subject Range Query Range Percent Splice Strand
heph-RN 664..1789 1..1118 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:49:02 Download gff for FMO10392.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 31873834..31874099 217..482 100 <- Minus
3R 31881748..31881875 89..216 99 <- Minus
3R 31959041..31959125 1..88 94   Minus
3R 31865751..31866036 801..1079 94 <- Minus
3R 31866119..31866436 483..800 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:19:50 Download gff for FMO10392.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27691473..27691758 801..1079 94 <- Minus
arm_3R 27691841..27692158 483..800 100 <- Minus
arm_3R 27699556..27699821 217..482 100 <- Minus
arm_3R 27707470..27707597 89..216 99 <- Minus
arm_3R 27784763..27784847 1..88 94   Minus