FMO10392.5prime Sequence
1151 bp (1045 high quality bases) assembled on 2010-11-12
> FMO10392.5prime
CAGTCGACATGATGTCCTGCCCCATTCCCATGCCAATGCCAATTTCTTCA
TTACACAAATCAGAATTTGAACCGGTTAATATTGGAGTTAAGCGCGGAAG
CGACGAACTTTTGAGTCAAGCAGCGGTCATGGCGCCCGCTTCCGACAATA
ACAATCAGGACCTGGCCACAAAGAAGGCCAAACTGGAGCCGGGCACTGTG
CTGGCCGGCGGAATTGCCAAGGCCTCAAAAGTCATCCACTTGCGCAACAT
TCCGAACGAGTCCGGCGAGGCAGATGTGATTGCCCTGGGCATTCCGTTTG
GACGTGTGACCAACGTGCTGGTGCTCAAGGGCAAGAACCAGGCTTTCATC
GAGATGGCCGACGAGATCTCCGCAACGTCAATGGTGTCCTGTTACACAGT
AACTCCGCCCCAGATGCGCGGCCGCATGGTCTACGTGCAGTTTTCTAATC
ATCGCGAACTAAAGACGGACCAAGGTCACAACAACTCGACCGCCCATAGC
GACTACAGCGTCCAGTCCCCGGCGAGCGGATCGCCTCTGCCCCTTAGCGC
CGCTGCCAACGCGACCAGCAACAATGCAAACAGCTCAAGCGACAGCAACA
GCGCCATGGGAATCTTACAAAACACAAGCGCCGTCAATGCGGGCGGCAAC
ACCAACGCTGCCGGGGGACCCAATACTGTGCTCCGTGTGATTGTCGAGTC
CTTGATGTACCCCGTCTCGCTGGACATACTGCACCAGATCTTCCAGCGCT
ACGGCAAGGTGCTGAAGATTGTCACCTTCACAAAGAACAATTCATTCCAG
GCCCTCATCCAATATCCGGACGCCAATTCCGCCCAGCACGCCAAGTCGCT
CCTGGACGGCAGAATATATACACGGTTGCTGCACGTTGCGTATTGATAAC
AGCAAGCTGACGGCTCTGAATGTAAGTACAACAACGACAATCGCCGCGAC
TTCCCTAACCCCGCTCTGCCACTGTGAACCGGGAGTGATATTCATGCCCA
CCGCCGCGACTGATGAACACAATGATTTGCTTTTGATCGCCGCCCGTCAG
CGACTTCTCTTCTTCAGGTGATTAAATAGTCAACGACTGGGCGCCCCCGG
AGTCTCTGCCGCCTTGGCTGGCTGGCACTCCATGACCGTGATACAAACGC
C
FMO10392.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:08:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
heph-RV | 3128 | CG31000-RV | 930..2042 | 8..1113 | 5120 | 98.2 | Plus |
heph-RP | 2592 | CG31000-RP | 394..1506 | 8..1113 | 5120 | 98.2 | Plus |
heph-RN | 7366 | CG31000-RN | 671..1783 | 8..1113 | 5120 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:08:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31866118..31866436 | 801..483 | 1595 | 100 | Minus |
3R | 32079331 | 3R | 31873834..31874100 | 482..216 | 1335 | 100 | Minus |
3R | 32079331 | 3R | 31865775..31866038 | 1054..799 | 825 | 92.8 | Minus |
3R | 32079331 | 3R | 31881748..31881873 | 216..91 | 630 | 100 | Minus |
3R | 32079331 | 3R | 31959035..31959119 | 92..8 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:08:44 has no hits.
FMO10392.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:15:44 Download gff for
FMO10392.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
heph-RM | 1179..1269 | 1..91 | 96 | -> | Plus |
heph-RM | 1308..2341 | 92..1118 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:19:50 Download gff for
FMO10392.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
heph-RN | 664..1789 | 1..1118 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:49:02 Download gff for
FMO10392.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
heph-RN | 664..1789 | 1..1118 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:49:02 Download gff for
FMO10392.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31873834..31874099 | 217..482 | 100 | <- | Minus |
3R | 31881748..31881875 | 89..216 | 99 | <- | Minus |
3R | 31959041..31959125 | 1..88 | 94 | | Minus |
3R | 31865751..31866036 | 801..1079 | 94 | <- | Minus |
3R | 31866119..31866436 | 483..800 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:19:50 Download gff for
FMO10392.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27691473..27691758 | 801..1079 | 94 | <- | Minus |
arm_3R | 27691841..27692158 | 483..800 | 100 | <- | Minus |
arm_3R | 27699556..27699821 | 217..482 | 100 | <- | Minus |
arm_3R | 27707470..27707597 | 89..216 | 99 | <- | Minus |
arm_3R | 27784763..27784847 | 1..88 | 94 | | Minus |