FMO10393.5prime Sequence
1139 bp (1026 high quality bases) assembled on 2010-11-12
> FMO10393.5prime
CAGTCGACATGCGTGAATGTATCTCTATCCATGTTGGTCAGGCTGGTGTC
CAGATTGGAAACGCCTGCTGGGAGCTCTACTGCTTGGAGCACGGCATCCA
GCCCGATGGCCAGATGCCGTCTGACAAGACCGTGGGCGGAGGTGATGACT
CGTTCAACACCTTCTTCAGCGAGACTGGAGCTGGCAAGCACGTGCCCCGC
GCCGTGTTTGTGGATCTGGAACCCACTGTGGTCGATGAGGTCCGTACCGG
AACCTACCGTCAGCTGTTCCACCCTGAGCAGCTGATCACTGGTAAGGAGG
ATGCGGCCAACAACTACGCCCGTGGCCACTACACCATCGGCAAGGAGATC
GTCGATCTGGTTCTGGACAGGATCCGCAAGCTGGCCGATCAGTGCACCGG
TCTGCAGGGCTTCCTCATCTTCCACTCGTTCGGTGGAGGTACCGGCTCCG
GCTTCACCTCGCTGCTGATGGAGCGTCTCTCCGTGGACTACGGCAAGAAG
TCCAAGCTGGAGTTCGCCATCTACCCAGCCCCCCAGGTGTCCACTGCCGT
GGTCGAGCCCTACAACTCCATCCTGACCACCCACACCACCCTGGAGCATT
CCGACTGCGCCTTCATGGTCGACAACGAGGCTATCTACGACATCTGCCGC
CGCAACCTGGACATTGAGCGCCCCACGTACACCAACCTGAACCGTCTGAT
TGGCCAGATCGTGTCCTCGATTACCGCCTCTCTGCGATTCGATGGTGCCC
TTAACGTGGATCTGACTGAGTTCCAGACCAACTTGGTGCCCTACCCACGT
ATTCACTTCCCTCTGGTGACCTACGCCCCCGTTATCTCCGCCGAGAAGCC
TACCACGAGCAGCTGTCGGTGGCTGAGATCACCAACGCCTGCTTCGAGCC
GGCCAACCAGATGGTCAAGTGCGATCCCGTCACGGCAAGTACATGGCCTG
CTGCATGCTTTACGCGGTGATGTGTGCCCAAGACGTCAACGCCGCTATGC
ACCATCAGACCAAGCGCACATTCAATTCGTCGACTGGTGCCCACTGCTTC
AAGTTGCATCAACTACAGCCACCCACCGTGGTGCTGGAGTGATTGGCAAG
GTGCACGTGCCTGTGCATGTTTGTCCAACCACGGGCCAT
FMO10393.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:08:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alphaTub84B-RA | 1752 | CG1913-RA | 144..1283 | 9..1129 | 5135 | 97.9 | Plus |
| alphaTub84D-RA | 1980 | CG2512-RA | 507..1645 | 9..1128 | 3850 | 90.4 | Plus |
| alphaTub85E-RA | 1560 | CG9476-RA | 128..1187 | 34..1079 | 2980 | 86.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:08:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7087233..7088320 | 11..1084 | 4735 | 98.3 | Plus |
| 3R | 32079331 | 3R | 7531259..7532211 | 9..959 | 3570 | 92.1 | Plus |
| 3R | 32079331 | 3R | 9732286..9732781 | 529..34 | 1565 | 87.7 | Minus |
| 3R | 32079331 | 3R | 9731710..9732152 | 974..535 | 1180 | 86 | Minus |
| 3L | 28110227 | 3L | 9682200..9682770 | 276..846 | 575 | 73.4 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:08:47 has no hits.
FMO10393.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:15:44 Download gff for
FMO10393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaTub84B-RA | 197..1355 | 1..1139 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:19:53 Download gff for
FMO10393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaTub84B-RA | 136..1294 | 1..1139 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:49:04 Download gff for
FMO10393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaTub84B-RA | 136..1294 | 1..1139 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:49:04 Download gff for
FMO10393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7087225..7088363 | 1..1119 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:19:53 Download gff for
FMO10393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2912947..2914085 | 1..1119 | 97 | -> | Plus |
