Clone FMO10394 Report

Search the DGRC for FMO10394

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:103
Well:94
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG17734-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10394.5prime Sequence

311 bp (311 high quality bases) assembled on 2010-11-12

> FMO10394.5prime
CAGTCGACATGAGTTCCAAGTCCCTTTTCGACAGCGAGGAGGATGCCGCT
CAGGCCAACAAATTATCCAGGAAAGCAAAGGAATCGCCCTTCATGCTTGT
GGGTATTACCGGATTCGTGGCCGCCGGATTGATTGGAGCGTACAAGTACC
GGAACCGCGGAACGATGAGCACCAGCGTCTTCCTGATGCAGCTGCGAGTC
GCCGCCCAGGGAACCGTCGTCGGATGTCTGACCCTCGGACTGGCCTACAG
CATGGCCAAGGAGTACCTGTTCGACAAGGCGCCCAAGGAAAAGGCAAGCT
TTCTAGACCAT

FMO10394.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:08:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG17734-RB 1024 CG17734-RB 125..409 9..293 1425 100 Plus
CG17734-RA 764 CG17734-RA 125..408 9..292 1420 100 Plus
CG17734-RC 1317 CG17734-RC 511..702 102..293 960 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:08:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11242823..11243014 293..102 960 100 Minus
2R 25286936 2R 10420733..10421003 279..9 695 83.8 Minus
3R 32079331 3R 11243780..11243875 104..9 480 100 Minus
Blast to na_te.dros performed on 2014-11-26 17:08:50 has no hits.

FMO10394.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:15:45 Download gff for FMO10394.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17734-RB 95..389 1..297 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:19:54 Download gff for FMO10394.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17734-RB 118..412 1..297 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:49:06 Download gff for FMO10394.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17734-RB 118..412 1..297 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:49:06 Download gff for FMO10394.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11242820..11243013 103..297 98 <- Minus
3R 11243782..11243882 1..102 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:19:54 Download gff for FMO10394.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7068542..7068735 103..297 98 <- Minus
arm_3R 7069504..7069604 1..102 96   Minus