FMO10396.5prime Sequence
374 bp (374 high quality bases) assembled on 2010-11-12
> FMO10396.5prime
CAGTCGACATGCAGATCGTTGCTCTCACCCTCGTTGCGTTTGTGGCCATT
GCCGGTGCCTCCTGCCCGTATGCAGCTCCAGCTCCAGCTTATTCAGCGCC
CGCTGCTTCTTCTGGCTACCCGGCTCCACCATGCCCCACCAACTACCTGT
TCAGCTGCCAGCCCAATTTGGCCCCAGCTCCTTGTGCCCAGGAGGCCCCA
GCCTATGGATCCGCCGGCGCCTACACAGAACAGGTGCCCCACTACGTGGG
AAGTCCCAACCGAGAGCAGTTGCAGCAATTTCACCAGCGCATTGGAATGG
CGGCTTTGATGGAGGAACTGCGCGGCTTGGGCCAAGGAATCCAGGGTCAA
CAGTACGCAAGCTTTCTAGACCAT
FMO10396.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:08:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vm32E-RB | 499 | CG16874-RB | 31..379 | 8..356 | 1745 | 100 | Plus |
| Vm32E-RA | 437 | CG16874-RA | 31..379 | 8..356 | 1745 | 100 | Plus |
| Vm34Ca-RA | 491 | CG9271-RA | 256..361 | 119..224 | 230 | 82.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:08:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11171287..11171635 | 356..8 | 1745 | 100 | Minus |
| 2L | 23513712 | 2L | 13411318..13411376 | 177..119 | 205 | 89.8 | Minus |
Blast to na_te.dros performed 2014-11-26 17:08:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-C | 11124 | TART-C TARTC 11124bp | 8764..8855 | 93..4 | 113 | 59.8 | Minus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7311..7369 | 93..35 | 106 | 64.4 | Minus |
FMO10396.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:15:46 Download gff for
FMO10396.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vm32E-RA | 23..379 | 1..356 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:19:59 Download gff for
FMO10396.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vm32E-RA | 23..379 | 1..356 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:49:09 Download gff for
FMO10396.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vm32E-RA | 23..379 | 1..356 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:49:09 Download gff for
FMO10396.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11171287..11171638 | 1..356 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:19:59 Download gff for
FMO10396.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11171287..11171638 | 1..356 | 98 | | Minus |
