FMO10402.5prime Sequence
401 bp (401 high quality bases) assembled on 2010-11-30
> FMO10402.5prime
CAGTCGACATGGAGTTCAACAATCCCCTCTTGCTGAAGATCATCGAGCTG
GCCATCGCCATCGCCTGCATTGTGCTATACGAGACCCTTGGTAACTTGTC
CCTCCATCCGGTGATTGTGGCCGGCACCGTTGGTGGCTACACCGTCATCT
GCGGCGTTCTGCTGATCGGTCATGTGCTCAACTCGCTGGTGGAGAAGCGC
CTGAACGCCCTATTCTCGCTGATCGGCTGCCTGCTGTTCGTGGCCTCCGG
AGCACTGGTGATCGATGAGTGGCACGGCGGACTCCTGAATACCGATAGGA
AGCGCCAGGCCATTGGAGCCGGTTCCTTGATGATCATCAATGCGGCTGTC
TTCCTTCTGGACACTCTCTGCATCTGCCGGACGGCAAGCTTTCTAGACCA
T
FMO10402.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:12:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44325-RE | 1399 | CG44325-RE | 121..496 | 8..383 | 1820 | 98.9 | Plus |
| CG44325-RB | 741 | CG44325-RB | 121..496 | 8..383 | 1820 | 98.9 | Plus |
| CG44325-RD | 836 | CG44325-RD | 121..495 | 8..382 | 1815 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:12:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9071587..9071802 | 383..168 | 1065 | 99.5 | Minus |
| X | 23542271 | X | 9071870..9071990 | 170..50 | 575 | 98.3 | Minus |
| X | 23542271 | X | 9078336..9078379 | 51..8 | 205 | 97.7 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:12:06 has no hits.
FMO10402.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-12-01 09:52:57 Download gff for
FMO10402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7267-RB | 110..500 | 1..391 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:22:11 Download gff for
FMO10402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44325-RB | 114..504 | 1..391 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:51:04 Download gff for
FMO10402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44325-RB | 114..504 | 1..391 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:51:04 Download gff for
FMO10402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9071579..9071801 | 169..391 | 98 | <- | Minus |
| X | 9071872..9071989 | 51..168 | 98 | <- | Minus |
| X | 9078337..9078384 | 1..50 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:22:11 Download gff for
FMO10402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8965612..8965834 | 169..391 | 98 | <- | Minus |
| arm_X | 8965905..8966022 | 51..168 | 98 | <- | Minus |
| arm_X | 8972370..8972417 | 1..50 | 92 | | Minus |
