Clone FMO10403 Report

Search the DGRC for FMO10403

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:104
Well:3
Vector:pMK33-CFH-BD
Associated Gene/TranscriptRab21-RC
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10403.5prime Sequence

692 bp (692 high quality bases) assembled on 2010-11-30

> FMO10403.5prime
CAATCCACATGAGCTCGAGCAGAACGAGGAACGGCCCCCCGCTTAATTTC
AAGGCGGTGCTGCTGGGCGAAGGTTGTGTGGGCAAGACGTCGCTGGTGCT
GCGCTACATGGAAGACCGGTTCAATGCCCATCACCTAAGCACCCTGCAGG
CTTCCTTTGTCAGCCGCAAGATGTCCCTGGAGGATGGGAGAAGGGCGCAG
TTGAATATTTGGGACACGGCTGGTCAGGAGCGGTTCCACGCCCTGGGACC
CATCTACTATCGCGGCTCCGATGGCGCCCTGCTCGTCTATGACATAACGG
ACCGAGACTCGTTCCAGAAAGTCAAATCCTGGGTGCGGGAGCTCCGGCAA
ATGCGCGGCACGGAGATTGCCTTAATAATCGTCGGCAACAAGACTGATTT
GGAGGAACAGCGAGCAATAACGTTTTATGAGGCCCTTCAATATGCGCGCA
CGGTTGGCGCTCAATATGTAGAAACTTCGGCCAAGGAGAACGAGGGGGTG
GCTGAGCTCTTCGAGCTCCTGACCCAGCTGATGCTGGAGCAGTTGAGCCA
ACGGCAACCGGATGCGAGTCCACTTCGCCTCCAGAATCCGGATACGGATA
ACCTTAACAACTCCGATGACTCGGAGGCCCCGGATCCCGGAGATCCTGCG
GGCCATCGGTCCTGTTGCGGCATTGCAAGCTTTCTAGACCAT

FMO10403.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:12:10
Subject Length Description Subject Range Query Range Score Percent Strand
Rab21-RC 1064 CG17515-RC 159..824 9..674 3195 98.6 Plus
Rab21-RD 1050 CG17515-RD 145..810 9..674 3195 98.6 Plus
Rab21-RA 1077 CG17515-RA 234..837 71..674 2900 98.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:12:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 23012380..23012983 674..71 2900 98.7 Minus
X 23542271 X 23013041..23013106 74..9 315 98.5 Minus
Blast to na_te.dros performed on 2014-11-26 17:12:09 has no hits.

FMO10403.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-12-01 09:52:57 Download gff for FMO10403.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab21-RC 145..823 1..680 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:22:13 Download gff for FMO10403.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab21-RD 136..814 1..680 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:51:07 Download gff for FMO10403.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab21-RD 136..814 1..680 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:51:07 Download gff for FMO10403.5prime
Subject Subject Range Query Range Percent Splice Strand
X 23012376..23012981 73..680 98 <- Minus
X 23013043..23013113 1..72 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:22:13 Download gff for FMO10403.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 22414212..22414817 73..680 98 <- Minus
arm_X 22414879..22414949 1..72 94   Minus