Clone FMO10412 Report

Search the DGRC for FMO10412

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:104
Well:12
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG31919-RG
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10412.5prime Sequence

408 bp (408 high quality bases) assembled on 2010-11-30

> FMO10412.5prime
CAGTCGACATGCCGTACATAATCATACGGGGGAATCTAGCCTCCTACAGC
CACAAATATCCATGGAGGGTGCTCGTCTCCGGGTTGAAAGCTGACGACAT
CGAGCAGTTGAACAAGTTCTCCTGCGGCGGCTACAGCGACGAGTCCACCA
TCGTCTACTTAGTGCATCCTTGTCGGATTTTATCGGCGCTAGAAATCCTG
GGATTTCGCGTAGTGGCCAGCTCATCGACTGCCGTGAAGCAGGACTACAA
CGAGTACATGTGGACGATGCGCAAGGAGTTCGACGAACCAGAACCCTTGG
AAGCCGAGTCCGTGGTGCGAGAAAATCTATCGAATATTGGCCGCGAGGCA
GCCAGTTTATTTTAACTATCACAAGGTGGATTCGCCTGAAGCAAGCTTTC
TAGACCAT

FMO10412.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:12:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG44001-RE 2431 CG44001-RE 156..536 9..390 1840 99 Plus
CG44001-RD 2415 CG44001-RD 140..520 9..390 1840 99 Plus
CG44001-RA 2691 CG44001-RA 416..796 9..390 1840 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:12:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5046147..5046341 195..390 885 98 Plus
2L 23513712 2L 5045820..5045925 89..194 530 100 Plus
2L 23513712 2L 5044608..5044689 9..90 410 100 Plus
Blast to na_te.dros performed on 2014-11-26 17:12:04 has no hits.

FMO10412.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-12-01 09:52:56 Download gff for FMO10412.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31919-RC 409..797 1..390 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:22:09 Download gff for FMO10412.5prime
Subject Subject Range Query Range Percent Splice Strand
CG44001-RA 408..796 1..390 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:51:02 Download gff for FMO10412.5prime
Subject Subject Range Query Range Percent Splice Strand
CG44001-RA 408..796 1..390 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:51:02 Download gff for FMO10412.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5046147..5046341 195..390 97   Plus
2L 5044600..5044689 1..90 95 -> Plus
2L 5045822..5045925 91..194 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:22:09 Download gff for FMO10412.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5044600..5044689 1..90 95 -> Plus
arm_2L 5045822..5045925 91..194 100 -> Plus
arm_2L 5046147..5046341 195..390 97   Plus