FMO10415.5prime Sequence
939 bp (939 high quality bases) assembled on 2010-11-30
> FMO10415.5prime
CAGTCGACATGTCGCTCAGAAGGGGTGGATTGATGTCCTACAACCAGCGG
CGTATTGCCCGCTGGTACTTTGGAGGTCTGGCGAGCTCCATGGCTGCCAT
GGTGACTCATCCGATTGACTTGATCAAGGTGCTTATCCAAACTCAGGCGG
AGAAGCTATCGGTATTCCAGACCACCCGCAAGATTGTCAAGGAACAGGGA
CCTCTGGCCATGTACAATGGCATCTCGGCCTCAATGCTGCGCCAATACAC
GTACACATTGGCCCGTTTTGGCATTTATTCGGTGGGCTCTGGAGCTATGG
ACACCAGCACCATGGCCGGCAAAACATGTCTAGCCGCGATTGCCGGTGGA
ATTGGCGGGTTTGTGGGCGCTCCTGCAGATCTGATCAACGTCCGCCTGCA
GAACGATGTCAAGTTGCCACCAGATAATTTTGCGCAACTATAAGCACGCC
ATAGACGGACTGGTGCGAATCACCCGCGAAGAGGGATGGAAAAATCTCTT
CAATGGCTCCTCGATGATCGCGCTCCGTGGAGCTTTTATGACCGTAGGCC
AGATTGCGTTCTACGAGCAAAGCAAGTCCCAAATGATAAAATTGGGAATG
CCCGATTATATGGGCACCTACATCTTAGCATCAATGATCTCCTCCGTGGT
GGCCACCACCTTGACGCAGCCCATCGATGTGGTGAAGACACGTCGCATGA
ATGCAGCACCTGGCGAGTATTCTGGATTGGGGGATGTGTTTGTAAAGACT
TCGAAGGAGGGACCTCTGGCTTTCTTCAAGGGATACGTTCCCTCTTTGAG
TCGATTATTGCCGCACACGGTATTATTATTCTTGGGCCTCGAGTATCTGA
GGACTCACTTTGGATATCTACCAGAGCCAAAACAGACAGGTGCATTTTAT
CGATATGATGATGTCGATGACGCAGGCTTTCTAGACCAT
FMO10415.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:12:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dic2-RC | 1120 | CG4323-RC | 117..1028 | 9..921 | 4480 | 99.5 | Plus |
| Dic2-RA | 1599 | CG4323-RA | 596..1507 | 9..921 | 4480 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:12:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20500084..20500571 | 921..434 | 2425 | 99.8 | Minus |
| 3R | 32079331 | 3R | 20500897..20501312 | 424..9 | 2080 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:12:15 has no hits.
FMO10415.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-12-01 09:52:59 Download gff for
FMO10415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4323-RB | 434..1351 | 1..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:22:17 Download gff for
FMO10415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dic2-RA | 501..1418 | 1..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:51:11 Download gff for
FMO10415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dic2-RA | 590..1507 | 1..921 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:51:11 Download gff for
FMO10415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20500084..20500580 | 425..921 | 98 | <- | Minus |
| 3R | 20500897..20501318 | 1..424 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:22:17 Download gff for
FMO10415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16325806..16326302 | 425..921 | 98 | <- | Minus |
| arm_3R | 16326619..16327040 | 1..424 | 99 | | Minus |
