Clone FMO10427 Report

Search the DGRC for FMO10427

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:104
Well:27
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG31477-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10427.5prime Sequence

218 bp (218 high quality bases) assembled on 2010-11-30

> FMO10427.5prime
CAGTCGACATGAAAGCCTGGAGAGATCTGGGTATTACCTATATCCAGTAT
TCCAACATCGCAGCCCGTGTGGTGCGAGAGGCCCTGCGCATTGAGCTCCG
TGCAGACGCCGCCAAGCGAAACATCAGCCATGTGAAGTTCACTCCGTGGG
TGAACGGAAAGCCTGTGCCGCGCAAGAAGGTAGAACGTGAATCCGAATCT
GCAAGCTTTCTAGACCAT

FMO10427.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:12:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG31477-RC 424 CG31477-RC 130..321 9..200 960 100 Plus
CG31477-RB 490 CG31477-RB 196..387 9..200 960 100 Plus
CG31477-RA 482 CG31477-RA 196..387 9..200 960 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:12:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10122026..10122217 9..200 960 100 Plus
Blast to na_te.dros performed on 2014-11-26 17:12:32 has no hits.

FMO10427.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-12-01 09:53:02 Download gff for FMO10427.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31477-RB 159..362 1..206 96   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:22:27 Download gff for FMO10427.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31477-RA 189..392 1..206 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:51:19 Download gff for FMO10427.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31477-RA 189..392 1..206 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:51:19 Download gff for FMO10427.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10122019..10122222 1..206 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:22:27 Download gff for FMO10427.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5947741..5947944 1..206 96   Plus