FMO10438.5prime Sequence
1122 bp (1012 high quality bases) assembled on 2010-11-30
> FMO10438.5prime
CAGTCGACATGAAGAACCGCCAGCGAACGCGCCGAATATCGCTAAATGAA
AACCACAACAGATACATGGGCAGCGGCGGCATCGATGTACAAATAGTTAC
CAATACAAAGGAGCCCAATCAAGTCAATTTAAATTCATCGTCAGCCACGA
CGACCTCAGCGGAGGCTGCTCTGCCCGCTTCGCTTCCACTTGCTCAGATA
GCGCAGCAGCCACATACCCATCCCCATCCCCATCCCAATCCCCATCTCCA
CCAGCAACACCAGCTGATTGTGACGCCCACAACGATGACGGGCAAGTATC
ATCCAGCGCACGCCAAGCTGCGAAGATGCAAATCGACGCCGAGTCTCAAT
TGCGATGGCATGGCGGAGCCCATGGAGGAGGACCAGCTCCATCGCTTTGC
AGCATGCTCACGTAACCCCGCCGCGGAGGCTCAGCAGCATGCACAGCCAT
CGTGCAACAGCAGCAGCAGCAGCAGCGACGGCAGCTGCAACAGCAACAAG
TGCAGCAGCAACATCTGCGGTGCGCAGCCAACAACTCCGGAGTCATTGCG
CTTCGGATGCGCTCACTACAAGCGGCGGGCCATGTTCGTGACCCCCTGCT
GCAACAAGTTCTACAAGTGCCGATTTTGCCACGACGAGAACGAGACGCAT
CACTTCGATCGCAAAACGCTCACCGAACTAATATGCTCCGAGTGCAATAC
GCGGCAAACGGTGCGGGAGCAGTGCCTCAATTGCGGCGTGAGATTTGGTA
AGTACACCTGCCTGATCTGCAACCTCTTCGATGATGCGGACAAGCAGCAG
TACCATTGTCATGGATGTGGGATTTGTCGCATTGGCGGTGCGGAGAACTT
CTTCCACTGCGAGTGTGCAACATGTGCCTACCTATTCAGCTGAGATCGAT
GGCACGGTGCGTGAGAACATCTCGCGATCGCACTGCCCGTGTGCTGGGCG
ACATCCACACTTCGCGGCATACCCTGCCACATTCCCGACTGCGGACACTG
CTGCACAAGGATGGTGCTTCGACAGCTGCTGACTCCGGGCACTACCCTGT
CACTGCGAACCTCGCTGATCGATATGAACCGGCGCTGTGGGTATACTTGA
CGAACAGGCGGGAGCCAATGGC
FMO10438.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:12:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16947-RB | 1927 | CG16947-RB | 416..1529 | 9..1111 | 5030 | 97.8 | Plus |
| CG16947-RA | 2252 | CG16947-RA | 438..1551 | 9..1111 | 5030 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:12:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6463262..6463843 | 590..9 | 2910 | 100 | Minus |
| 2L | 23513712 | 2L | 6460555..6460717 | 752..590 | 815 | 100 | Minus |
| 2L | 23513712 | 2L | 6460329..6460483 | 903..751 | 675 | 98.7 | Minus |
| 2L | 23513712 | 2L | 6459890..6459988 | 1009..913 | 300 | 96 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:12:38 has no hits.
FMO10438.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-12-01 09:53:03 Download gff for
FMO10438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16947-RA | 1..1122 | 9..1120 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:22:32 Download gff for
FMO10438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16947-RA | 431..1559 | 1..1120 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:51:24 Download gff for
FMO10438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16947-RA | 431..1559 | 1..1120 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:51:24 Download gff for
FMO10438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6460323..6460481 | 753..907 | 97 | <- | Minus |
| 2L | 6460555..6460716 | 591..752 | 100 | <- | Minus |
| 2L | 6463262..6463850 | 1..590 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:22:32 Download gff for
FMO10438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6460323..6460481 | 753..907 | 97 | <- | Minus |
| arm_2L | 6460555..6460716 | 591..752 | 100 | <- | Minus |
| arm_2L | 6463262..6463850 | 1..590 | 99 | | Minus |
