FMO10439.5prime Sequence
1124 bp (1029 high quality bases) assembled on 2010-11-30
> FMO10439.5prime
CAGTCGACATGCAGCAGCTCCTGGTCGTGGCCCTGGTGGCGGTGGCCATC
GCGTCCTTGCCCCAACTGGCCGCAGGTAAAAAGCTGGGGAAGCGCTGCGT
GAACTGCACGTACCGCACTTACTACACCTACGGCGATGGGCGATCCCTGC
AGCGGGTTGTCTATAGAGATCCGGTCTACACACGTGCGCAGTCCTACGCG
AGCGGATGCAGCGGTAGCCCGTGCGGCGTGAACGCCGTGTGCCAGGAGGC
CTCCGGAGGACGGCCCGTCTGCTCGTGCCCGCCCGGATTCAGCGGTAATC
CGCTCACCCACTGCAATCGCGGCGAGTGCCTGGACAACGTCGACTGTCGC
GACAACCTGCAGTGCAAGGACAATCGCTGCGTTAATCCCTGCGTGGGTGC
CTGTGGCATTGGCTCCAATTGTGACGTCCGCAACCACGTGGCCGTGTGCA
GCTGCCCCGCCGGCTACAATGGCGACCCATACCACGCCTGCCACCTCAAC
GATCCGGAGGAGCAGTGCCATCCCAGTCCGTGCGGCGTTAACACCAAGTG
CGAGATCATCAACGGCGTGCCCACCTGCTCATGCGTTCACGGCTATGTGG
GCAATCCGCTGAGCGGCTGTCGCCACGAGTGCGATCACGATGGCGACTGC
AGCAGCCGGGACATGTGCTCCAGCAACTTCAAGTGCGTGCCGGCATGCGG
GCAGTGCGGCACTGGCGCCACCTGCCGAACGGTCAGCAATCACCGGGCTG
TCTGCGAGTGCCCCAAGGGCTACATTGGCAGCCCGTACACGGAGTGCCGA
CCGGAGTGCTATGGCGATGCCGACTGCCCGGCCGGGCGACCCGCCTGCTT
CTACGGCATCTGCAAGAACACCTGCGAGGGTGCCTGCGGCATCGGCGCCG
ACTGCAACCTGCGCGGCCTCACACCGTCTGCAGCTGCCCCGCGACATGAC
CGGCGATCCCTTCGTGCGCTGCCGTCCCTTCACCAAGGAGACCTTTGGCG
ACCCCATTCGTGCGGAACAACGCCATCTGGGTGCCCGGAACCGACAACTC
GGGCGCGAACGGCCGTCTGCACTGCTGCTGCCACACGCATCCGCGGACCA
TGACCGGGGTGAGTGCCTGACACA
FMO10439.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:12:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9572-RA | 1667 | CG9572-RA | 136..1264 | 9..1120 | 5030 | 97.3 | Plus |
| CG9572-RB | 1664 | CG9572-RB | 138..1261 | 14..1120 | 5005 | 97.3 | Plus |
| CG9572-RD | 1556 | CG9572-RD | 202..1153 | 186..1120 | 4145 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:12:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20154197..20154742 | 507..1048 | 2395 | 97.6 | Plus |
| X | 23542271 | X | 20150597..20150838 | 186..427 | 1210 | 100 | Plus |
| X | 23542271 | X | 20150061..20150236 | 11..186 | 880 | 100 | Plus |
| X | 23542271 | X | 20150947..20151026 | 428..507 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:12:41 has no hits.
FMO10439.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-12-01 09:53:04 Download gff for
FMO10439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9572-RA | 129..1163 | 9..1039 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:22:34 Download gff for
FMO10439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9572-RA | 136..1170 | 9..1039 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:51:25 Download gff for
FMO10439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9572-RA | 136..1170 | 9..1039 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:51:25 Download gff for
FMO10439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20150053..20150236 | 1..186 | 97 | -> | Plus |
| X | 20150598..20150836 | 187..425 | 100 | -> | Plus |
| X | 20150945..20151026 | 426..507 | 98 | -> | Plus |
| X | 20154198..20154733 | 508..1039 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:22:34 Download gff for
FMO10439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20044978..20045059 | 426..507 | 98 | -> | Plus |
| arm_X | 20044086..20044269 | 1..186 | 97 | -> | Plus |
| arm_X | 20044631..20044869 | 187..425 | 100 | -> | Plus |
| arm_X | 20048231..20048766 | 508..1039 | 98 | == | Plus |
