FMO10444.5prime Sequence
1113 bp (991 high quality bases) assembled on 2010-11-30
> FMO10444.5prime
CAGTCGACATGTCCCTGCCATCCAGAGCCAATATCGGATTACTCAACTGG
CTCATCGGCTGGCTGCTGCTGCTGTCGATGGTTTTGCTCAGAGGCTACAA
CGCTGCGTTGGCACCCACGCCGCCCACAACGTCAACTACAACCATCTCGC
CCTCCAATCTGCTGCCCTACTTCGACTTTGATGTGCCGCGCAACTTGACC
GTAACCGTTGGCCAGACCGGCTTTCTCCATTGCCGCGTGGAACGACTCGG
CGATAAGGACGTCTCTTGGATACGCAAACGTGATCTGCATATACTCACCG
CCGGCGGCACAACCTACACATCCGATCAGCGTTTTCAGGTTCTGCGACCC
GATGGCTCCGCCAATTGGACACTGCAAATCAAGTATCCGCAGCCACGTGA
CTCCGGCGTCTACGAGTGCCAAATCATCACGGAGCCCAAGATGTCCCTGT
CGTACACCTTCAACGTAGTGGAACTCAAAGCGGAAATCTTCGGGCCCAGC
GATCTGATGGTGAAAACCGGCAGTGACATAAACCTAACATGTAAAATTAT
GCAAGGACCCCACGAGCTGGGCAACATATTCTGGTACAAAGGCAGCGAAA
TGCTTGATGGCAAGGGAGAAAACGAAATCGACAGCTCCATGGCCCGGATT
CGCGTCGAGGATGATTGGACTGACGGCCTGACTTCCAGATTAAAAATCAA
GCGCGCCATGCCCGGCGATACCGGCAACTACACCTGTGTGCCGACGGTGG
CAAAAACCTCGAGCGTCTATGTGCACGTAATTATTGGCGAACATCCTGCG
GCCATGCAACACAATTCGAGTAGCAACAGCAACAGCTTCTACTGCGGCAT
CTGCTGCATGCTGCTGAGCATTGTGTCCTGCTGCCTGCAGCATTTTTATG
AAACGGGGTGTGATATCTCCATGCCGCGGCAGCGTGGCAAATCCGCGGGA
TTGGGGCCCCCAAGCGAGCACGCTACGACCAGCGAAACAGGAATATGCTG
CAGAGTTGCAGCAGCCGCCAGCGCATCTGGCGCAGTAGCATCCGCATTAG
CACGGTGCAACATGTTTGAGAGACGCCCACGGCATCGGGTTCTGAAAGAC
AGCTTTCTAACAT
FMO10444.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:12:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr-RB | 2859 | CG13439-RB | 704..1789 | 9..1084 | 5040 | 98.3 | Plus |
dpr-RA | 3598 | CG13439-RA | 704..1789 | 9..1084 | 5040 | 98.3 | Plus |
dpr2-RG | 1661 | CG33507-RG | 833..963 | 312..442 | 190 | 76.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:12:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20748325..20748614 | 786..1066 | 950 | 94.1 | Plus |
2R | 25286936 | 2R | 20726043..20726213 | 92..262 | 855 | 100 | Plus |
2R | 25286936 | 2R | 20734315..20734450 | 336..471 | 665 | 99.3 | Plus |
2R | 25286936 | 2R | 20745784..20745905 | 471..592 | 610 | 100 | Plus |
2R | 25286936 | 2R | 20747422..20747523 | 686..787 | 510 | 100 | Plus |
2R | 25286936 | 2R | 20746004..20746102 | 590..688 | 495 | 100 | Plus |
2R | 25286936 | 2R | 20699186..20699271 | 9..94 | 430 | 100 | Plus |
2R | 25286936 | 2R | 20734170..20734249 | 261..340 | 400 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 17:12:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2740..2797 | 799..858 | 142 | 73.3 | Plus |
FMO10444.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-12-01 09:53:05 Download gff for
FMO10444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr-RA | 330..1428 | 1..1088 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:22:36 Download gff for
FMO10444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr-RA | 697..1795 | 1..1088 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:51:28 Download gff for
FMO10444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr-RA | 697..1795 | 1..1088 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:51:28 Download gff for
FMO10444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20699179..20699257 | 1..80 | 96 | -> | Plus |
2R | 20726034..20726211 | 81..260 | 96 | -> | Plus |
2R | 20734170..20734247 | 261..338 | 100 | -> | Plus |
2R | 20734318..20734450 | 339..471 | 99 | -> | Plus |
2R | 20745785..20745904 | 472..591 | 100 | -> | Plus |
2R | 20746006..20746102 | 592..688 | 100 | -> | Plus |
2R | 20747425..20747522 | 689..786 | 100 | -> | Plus |
2R | 20748326..20748639 | 787..1088 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:22:36 Download gff for
FMO10444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16586684..16586762 | 1..80 | 96 | -> | Plus |
arm_2R | 16613539..16613716 | 81..260 | 96 | -> | Plus |
arm_2R | 16621675..16621752 | 261..338 | 100 | -> | Plus |
arm_2R | 16621823..16621955 | 339..471 | 99 | -> | Plus |
arm_2R | 16633290..16633409 | 472..591 | 100 | -> | Plus |
arm_2R | 16633511..16633607 | 592..688 | 100 | -> | Plus |
arm_2R | 16634930..16635027 | 689..786 | 100 | -> | Plus |
arm_2R | 16635831..16636144 | 787..1088 | 93 | | Plus |