Clone FMO10444 Report

Search the DGRC for FMO10444

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:104
Well:44
Vector:pMK33-CFH-BD
Associated Gene/Transcriptdpr-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10444.5prime Sequence

1113 bp (991 high quality bases) assembled on 2010-11-30

> FMO10444.5prime
CAGTCGACATGTCCCTGCCATCCAGAGCCAATATCGGATTACTCAACTGG
CTCATCGGCTGGCTGCTGCTGCTGTCGATGGTTTTGCTCAGAGGCTACAA
CGCTGCGTTGGCACCCACGCCGCCCACAACGTCAACTACAACCATCTCGC
CCTCCAATCTGCTGCCCTACTTCGACTTTGATGTGCCGCGCAACTTGACC
GTAACCGTTGGCCAGACCGGCTTTCTCCATTGCCGCGTGGAACGACTCGG
CGATAAGGACGTCTCTTGGATACGCAAACGTGATCTGCATATACTCACCG
CCGGCGGCACAACCTACACATCCGATCAGCGTTTTCAGGTTCTGCGACCC
GATGGCTCCGCCAATTGGACACTGCAAATCAAGTATCCGCAGCCACGTGA
CTCCGGCGTCTACGAGTGCCAAATCATCACGGAGCCCAAGATGTCCCTGT
CGTACACCTTCAACGTAGTGGAACTCAAAGCGGAAATCTTCGGGCCCAGC
GATCTGATGGTGAAAACCGGCAGTGACATAAACCTAACATGTAAAATTAT
GCAAGGACCCCACGAGCTGGGCAACATATTCTGGTACAAAGGCAGCGAAA
TGCTTGATGGCAAGGGAGAAAACGAAATCGACAGCTCCATGGCCCGGATT
CGCGTCGAGGATGATTGGACTGACGGCCTGACTTCCAGATTAAAAATCAA
GCGCGCCATGCCCGGCGATACCGGCAACTACACCTGTGTGCCGACGGTGG
CAAAAACCTCGAGCGTCTATGTGCACGTAATTATTGGCGAACATCCTGCG
GCCATGCAACACAATTCGAGTAGCAACAGCAACAGCTTCTACTGCGGCAT
CTGCTGCATGCTGCTGAGCATTGTGTCCTGCTGCCTGCAGCATTTTTATG
AAACGGGGTGTGATATCTCCATGCCGCGGCAGCGTGGCAAATCCGCGGGA
TTGGGGCCCCCAAGCGAGCACGCTACGACCAGCGAAACAGGAATATGCTG
CAGAGTTGCAGCAGCCGCCAGCGCATCTGGCGCAGTAGCATCCGCATTAG
CACGGTGCAACATGTTTGAGAGACGCCCACGGCATCGGGTTCTGAAAGAC
AGCTTTCTAACAT

FMO10444.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:12:46
Subject Length Description Subject Range Query Range Score Percent Strand
dpr-RB 2859 CG13439-RB 704..1789 9..1084 5040 98.3 Plus
dpr-RA 3598 CG13439-RA 704..1789 9..1084 5040 98.3 Plus
dpr2-RG 1661 CG33507-RG 833..963 312..442 190 76.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:12:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20748325..20748614 786..1066 950 94.1 Plus
2R 25286936 2R 20726043..20726213 92..262 855 100 Plus
2R 25286936 2R 20734315..20734450 336..471 665 99.3 Plus
2R 25286936 2R 20745784..20745905 471..592 610 100 Plus
2R 25286936 2R 20747422..20747523 686..787 510 100 Plus
2R 25286936 2R 20746004..20746102 590..688 495 100 Plus
2R 25286936 2R 20699186..20699271 9..94 430 100 Plus
2R 25286936 2R 20734170..20734249 261..340 400 100 Plus
Blast to na_te.dros performed 2014-11-26 17:12:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2740..2797 799..858 142 73.3 Plus

FMO10444.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-12-01 09:53:05 Download gff for FMO10444.5prime
Subject Subject Range Query Range Percent Splice Strand
dpr-RA 330..1428 1..1088 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:22:36 Download gff for FMO10444.5prime
Subject Subject Range Query Range Percent Splice Strand
dpr-RA 697..1795 1..1088 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:51:28 Download gff for FMO10444.5prime
Subject Subject Range Query Range Percent Splice Strand
dpr-RA 697..1795 1..1088 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:51:28 Download gff for FMO10444.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 20699179..20699257 1..80 96 -> Plus
2R 20726034..20726211 81..260 96 -> Plus
2R 20734170..20734247 261..338 100 -> Plus
2R 20734318..20734450 339..471 99 -> Plus
2R 20745785..20745904 472..591 100 -> Plus
2R 20746006..20746102 592..688 100 -> Plus
2R 20747425..20747522 689..786 100 -> Plus
2R 20748326..20748639 787..1088 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:22:36 Download gff for FMO10444.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16586684..16586762 1..80 96 -> Plus
arm_2R 16613539..16613716 81..260 96 -> Plus
arm_2R 16621675..16621752 261..338 100 -> Plus
arm_2R 16621823..16621955 339..471 99 -> Plus
arm_2R 16633290..16633409 472..591 100 -> Plus
arm_2R 16633511..16633607 592..688 100 -> Plus
arm_2R 16634930..16635027 689..786 100 -> Plus
arm_2R 16635831..16636144 787..1088 93   Plus