FMO10465.5prime Sequence
1134 bp (1011 high quality bases) assembled on 2010-11-30
> FMO10465.5prime
CAGTCGACATGGCAACGCAAAAGGAAGATCACACCGCCCTGGATCTCATA
ATCAAGTCACTCAAGTCGCCTACAATGGTCTGCGAGGGAACCCACTTTGA
CGGCAAGATTCCGCACACGTTCGTCATCTTTGGGGCGTCGGGCGATCTGG
CCAAGAAGAAGATCTACCCCACGCTCTGGTGGCTCTACCGCGATGACCTG
CTGCCCAAGCCGACCAAGTTCTGCGGCTATGCCCGTTCCATGCTGACCGT
CGATAGCATCAAGGAGCAGTGTCTGCCGTACATGAAGGTCCAGCCGCACG
AGCAGAAGAAGTACGAGGAGTTCTGGGCCCTCAATGAGTACGTGTCCGGC
AGATATGACGGACGCACTGGCTTCGAGCTGCTTAACCAGCAGCTGGAGAT
TATGGAGAACAAGAACAAGGCCAATTTTTTCTTCTATCTGGCCCTGCCGC
CCAGCGTCTTCGAGGAGGTGACTGTCAACATCAAGCAGATCTGCATGTCG
GTCTGCGGTTGGAACCGCGTGATCATCGAGAAGCCTTTCGGCCGGGATGA
CGCCTCCTCGCAGGCGCTGAGCGACCATCTGGCCGGTCTGTTCCAGGAGG
ATCAGCTGTACCGCATCGATCACTACCTGGGCAAGGAGATGGTGCAGAAC
CTGATGACCATACGCTTCGGCAACAAGATCCTCAGCTCGACGTGGAACCG
CGAGAACATCGCCTCCGTGCTGATCACGTTCAAGGAGCCCTTCGGCACGC
AGGGTCGTGGCGGCTACTTCGACGAGTTCGGCATCATACGCGACGTGATG
CAGAACCATCTGCTGCAGATCCTCTCGCTGGTGGCCATGGAGAAGCCGGT
GAGCTGCCACCCGGACGACATTCGTGACGAGAAGTCAAGGTGCTGAGAGC
ATCGAGGCCCTGACGCTGGATGACATGGTGCTGGGCCAGTACCTGGGCAA
TCCGCAGGGTACAACGATGATGCGCGCACGGCTACGTGAGGACCCCCACG
TTAGCACGATTCGAACACCGCCCACCTACGCCCTCGGCGGTGCCTCAGAA
TCAACACGAGCGCTGCAGGGAGTGCCTTCATTCTGCCTGCCGCAGGCGCT
GAACGAGGCCTAGGCGGAAGTGGGCCATCCAGAT
FMO10465.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:12:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zw-RA | 2092 | CG12529-RA | 351..1472 | 9..1122 | 5035 | 97.3 | Plus |
| Zw-RB | 2069 | CG12529-RB | 346..1449 | 27..1122 | 4945 | 97.3 | Plus |
| Zw-RC | 1797 | CG12529-RC | 75..1177 | 28..1122 | 4940 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:12:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19671108..19671647 | 505..1039 | 2310 | 98.2 | Plus |
| X | 23542271 | X | 19670482..19670745 | 26..289 | 1320 | 100 | Plus |
| X | 23542271 | X | 19670804..19671023 | 286..505 | 1025 | 97.7 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:12:57 has no hits.
FMO10465.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-12-01 09:53:07 Download gff for
FMO10465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zw-RA | 361..1491 | 1..1122 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:22:45 Download gff for
FMO10465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zw-RA | 294..1424 | 1..1122 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:51:36 Download gff for
FMO10465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zw-RA | 342..1472 | 1..1122 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:51:36 Download gff for
FMO10465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19670484..19670743 | 28..287 | 100 | -> | Plus |
| X | 19670806..19671023 | 288..505 | 97 | -> | Plus |
| X | 19671109..19671733 | 506..1122 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:22:45 Download gff for
FMO10465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19564517..19564776 | 28..287 | 100 | -> | Plus |
| arm_X | 19564839..19565056 | 288..505 | 97 | -> | Plus |
| arm_X | 19565142..19565766 | 506..1122 | 96 | | Plus |
