FMO10501.5prime Sequence
1155 bp (1040 high quality bases) assembled on 2010-12-06
> FMO10501.5prime
CAGTCGACATGCGGAAGCTTTGTTCGAGTGAGTCAGTTTGTTCTGGAATT
GAGGTTGAAATTGAAAATAATAACAATAATCATATTCATCATGGCGAGAC
AACGTATCACATGAAAATACTGGTGCCCGCGGTGGCCTCCGGGGCCATCA
TTGGCAAAGGTGGCGAGACGATCGCCTCCCTGCAGAAGGACACGGGTGCT
AGGGTCAAGATGTCCAAGTCGCACGACTTCTACCCAGGCACCACCGAACG
CGTGTGCCTGATCACCGGCTCCACGGAGGCTATCATGGTCGTGATGGAGT
TCATCATGGACAAGATCCGCGAGAAGCCCGACCTGACCAACAAGATCGTC
GATACCGACTCAAAACAGACACAGGAGCGCGACAAGCAGGTCAAGATCCT
GGTGCCCAACTCGACCGCCGGCATGATCATTGGCAAGGGCGGTGCCTTCA
TTAAACAGATCAAGGAGGAGAGCGGCTCCTATGTCCAGATCTCGCAGAAG
CCCACGGATGTGTCGTTGCAGGAGCGCTGCATCACCATCATAGGCGACAA
GGAGAACAATAAGAACGCCTGCAAGATGATCCTCTCGAAGATCGTCGAAG
ATCCCCAGTCGGGCACCTGCCTGAACGTATCCTACGCGGACGTCAGCGGC
CCGGTGGCCAACTTTAATCCGACCGGCTCCCCGTACGCCACCAATCAGAA
TGCCATCAACTCGAGCACCGCTTCGTTGAACTCCACGTTGGGCACCACGA
TCGGCGGTGCAAACTCGGCGGCCAGCCTGCTAGTCAACGGCACCGGCATC
AATTTGTCCATCAATCTGGGCTCACCCAATCCGGCGCCCAATCTAGCGGT
TGCCACACAGCTGCTCGAGCATATAAAGGTTGCCATGCGCGGCTCTGGCT
ATTCGGAGACCGTAACGAACGAAGTTGTCGCCGCTCTGAGCGTGCTGGCC
AGTACGGCGTCCTTGGAATGGGCGTGGGTGTGTCGCACACCAACGGCGCC
CACTCAACGCTGGGCAACTTCCTGGGGCGTAACGACGCTGGACCAGCAGA
CAGCCGCTGCGCAATCGCCGGCCACCGGCCAGCATGTGTTCGGTGCCGTT
GGCAAGGTAATCTGGACAATATGCCGCACCGTGTGCTCTCTGGGAACTTG
CGCAG
FMO10501.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:13:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ps-RB | 4508 | CG8144-RB | 139..1260 | 9..1128 | 5365 | 98.9 | Plus |
| ps-RJ | 2558 | CG8144-RJ | 139..1260 | 9..1128 | 5365 | 98.9 | Plus |
| ps-RR | 3624 | CG42670-RR | 1224..2326 | 28..1128 | 5270 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:13:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9445252..9445898 | 235..881 | 3220 | 99.8 | Plus |
| 3R | 32079331 | 3R | 9445967..9446200 | 877..1110 | 910 | 94.5 | Plus |
| 3R | 32079331 | 3R | 9445043..9445188 | 93..238 | 730 | 100 | Plus |
| 3R | 32079331 | 3R | 9444011..9444077 | 28..94 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:13:25 has no hits.
FMO10501.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-06 14:06:56 Download gff for
FMO10501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ps-RB | 132..1273 | 1..1142 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:23:02 Download gff for
FMO10501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ps-RJ | 132..1273 | 1..1142 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:51:52 Download gff for
FMO10501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ps-RJ | 132..1273 | 1..1142 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:51:52 Download gff for
FMO10501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9444011..9444076 | 28..93 | 100 | -> | Plus |
| 3R | 9445044..9445187 | 94..237 | 100 | -> | Plus |
| 3R | 9445255..9445895 | 238..878 | 99 | -> | Plus |
| 3R | 9445969..9446233 | 879..1142 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:23:02 Download gff for
FMO10501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5269733..5269798 | 28..93 | 100 | -> | Plus |
| arm_3R | 5270766..5270909 | 94..237 | 100 | -> | Plus |
| arm_3R | 5270977..5271617 | 238..878 | 99 | -> | Plus |
| arm_3R | 5271691..5271955 | 879..1142 | 94 | | Plus |
