FMO10504.5prime Sequence
717 bp (497 high quality bases) assembled on 2010-12-06
> FMO10504.5prime
CAGTCGACATGCGGAAGCTTTGTTCGAGTGAGTCAGTTTGTTCTGGAATT
GAGGTTGAAATTGAAAATAATAACAATAATCATATTCATCATGGCGAGAC
AACGTATCACATGAAAATACTGGTGCCCGCGGTGGCCTCCGGGGCCATCA
TTGGCAAAGGTGGCGAGACGATCGCCTCCCTGCAGAAGGACACGGGTGCT
AGGGTCAAGATGTCCAAGTCGCACGACTTCTACCCAGGCACCACCGAACG
CGTGTGCCTGATCACCGGCTCCACGGAGGCTATCATGGTCGTGATGGAGT
TCATCATGGACAAGATCCGCGAGAAGCCCGACCTGACCAACAAGATCGTC
GATACCGACTCAAAACAGACACAGGAGCGCGACAAGCAGGTCAAGATCCT
GGTGCCCAACTCGACCGCCGGCATGATCATTGGCAAGGGTTTTTTTTTTC
ATTAAAACAGATCAAGGAGGAGAGCGGCTCCTATGTCCAGATCTCGCAGA
AGCCCACGGATGTGTCGTTGCAGGAGCGCTGCATCACATCATAGGCGACA
GGGAGAACAATAAGAAACGCCTGCAAGATGATCCTCTCGAAATCGTCAAA
GATCCCAGTCGGGCACCTGCCTGAACGTATCCTAGCGGACGTCAGCGGCC
CGGTGCCACTTTATTCGACGGTCTCCGTACGCCACCAATCAGATGCCATC
CACTCGAGCACCGGCTC
FMO10504.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:13:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ps-RB | 4508 | CG8144-RB | 139..850 | 9..713 | 3085 | 96.6 | Plus |
| ps-RJ | 2558 | CG8144-RJ | 139..850 | 9..713 | 3085 | 96.6 | Plus |
| ps-RR | 3624 | CG42670-RR | 1224..1916 | 28..713 | 2990 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:13:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9445252..9445737 | 235..713 | 1670 | 94.7 | Plus |
| 3R | 32079331 | 3R | 9445043..9445188 | 93..238 | 730 | 100 | Plus |
| 3R | 32079331 | 3R | 9444011..9444077 | 28..94 | 335 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 17:13:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Idefix | 7411 | Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). | 6718..6751 | 61..94 | 107 | 79.4 | Plus |
FMO10504.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-06 14:06:59 Download gff for
FMO10504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ps-RB | 132..852 | 1..717 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:23:09 Download gff for
FMO10504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ps-RJ | 132..852 | 1..717 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:51:59 Download gff for
FMO10504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ps-RJ | 132..852 | 1..717 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:51:59 Download gff for
FMO10504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9444011..9444076 | 28..93 | 100 | -> | Plus |
| 3R | 9445044..9445187 | 94..237 | 100 | -> | Plus |
| 3R | 9445255..9445739 | 238..717 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:23:09 Download gff for
FMO10504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5269733..5269798 | 28..93 | 100 | -> | Plus |
| arm_3R | 5270766..5270909 | 94..237 | 100 | -> | Plus |
| arm_3R | 5270977..5271461 | 238..717 | 94 | | Plus |
