FMO10508.5prime Sequence
1149 bp (981 high quality bases) assembled on 2010-12-06
> FMO10508.5prime
CAGTCGACATGCGGAAGCTTTGTTCGAGTGAGTCAGTTTGTTCTGGAATT
GAGGTTGAAATTGAAAATAATAACAATAATCATATTCATCATGGCGAGAC
AACGTATCACATGAAAATACTGGTGCCCGCGGTGGCCTCCGGGGCCATCA
TTGGCAAAGGTGGCGAGACGATCGCCTCCCTGCAGAAGGACACGGGTGCT
AGGGTCAAGATGTCCAAGTCGCACGACTTCTACCCAGGCACCACCGAACG
CGTGTGCCTGATCACCGGCTCCACGGAGGCTATCATGGTCGTGATGGAGT
TCATCATGGACAAGATCCGCGAGAAGCCCGACCTGACCAACAAGATCGTC
GATACCGACTCAAAACAGACACAGGAGCGCGACAAGCAGGTCAAGATCCT
GGTGCCCAACTCGACCGCCGGCATGATCATTGGCAAGGGTGTTTTTTTCA
TTAAACAGATCAAGGAGGAGAGCGGCTCCTATGTCCAGATCTCGCAGAAG
CCCACGGATGTGTCGTTGCAGGAGCGCTGCATCACCATCATAGGCGACAA
GGAGAACAATAAGAACGCCTGCAAGATGATCCTCTCGAAGATCGTCGAAG
ATCCCCAGTCGGGCACCTGCCTGAACGTATCCTACGCGGACGTCAGCGGC
CCGGTGGCCAACTTTAATCCGACCGGCTCCCCGTACGCCACCAATCAGAA
TGCCATCAACTCGAGCACCGCTTCGTTGAACTCCACGTTGGGCACCACGA
TCGGCGGTGCAAACTCGGCGGCCAGCCTGCTAGTCACGGCACCGGCATCA
ATTTGTCATCATCTGGGCTCACCCAATCCGGCGCCCAATCTAGCGGGTTG
CACACAGCTGCTCGAGCATATTAAGGTTGCCATGCGCGGCTCTGGGCTAT
TCGGAGACTGTAACGAACGAAGTTGGTCGCCGCTCTGAGCGTGCTGGGCC
AAGTACGGCGTCCTTGGAATGGGCGTGGGTGTGTCGCACACCAACGGCGC
CCACTCAACGCTGGGCAACTTCCTGGGCGTACGACGCTGAACCAGCAGAC
AGCCGCTGGCGCATCCTGCGGGCCACCGCCAGCATGTGTTCGTGCCGTTG
GACAGTAATCTTGGGAGCATATTGCCGACGTGACCTCTTGCACTTGCCG
FMO10508.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:13:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ps-RB | 4508 | CG8144-RB | 139..1236 | 9..1105 | 5060 | 98 | Plus |
| ps-RJ | 2558 | CG8144-RJ | 139..1236 | 9..1105 | 5060 | 98 | Plus |
| ps-RR | 3624 | CG42670-RR | 1224..2302 | 28..1105 | 4965 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:13:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9445252..9445898 | 235..878 | 2965 | 98.3 | Plus |
| 3R | 32079331 | 3R | 9445043..9445188 | 93..238 | 730 | 100 | Plus |
| 3R | 32079331 | 3R | 9445967..9446156 | 874..1065 | 720 | 96.4 | Plus |
| 3R | 32079331 | 3R | 9444011..9444077 | 28..94 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:13:40 has no hits.
FMO10508.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-06 14:07:00 Download gff for
FMO10508.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ps-RB | 132..1250 | 1..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:23:11 Download gff for
FMO10508.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ps-RJ | 132..1250 | 1..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:52:02 Download gff for
FMO10508.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ps-RJ | 132..1250 | 1..1119 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:52:02 Download gff for
FMO10508.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9445969..9446210 | 876..1119 | 93 | | Plus |
| 3R | 9444011..9444076 | 28..93 | 100 | -> | Plus |
| 3R | 9445044..9445187 | 94..237 | 100 | -> | Plus |
| 3R | 9445255..9445895 | 238..875 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:23:11 Download gff for
FMO10508.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5269733..5269798 | 28..93 | 100 | -> | Plus |
| arm_3R | 5270766..5270909 | 94..237 | 100 | -> | Plus |
| arm_3R | 5270977..5271617 | 238..875 | 98 | -> | Plus |
| arm_3R | 5271691..5271932 | 876..1119 | 93 | | Plus |
