Clone FMO10512 Report

Search the DGRC for FMO10512

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:105
Well:12
Vector:pMK33-CFH-BD
Associated Gene/Transcriptps-RJ
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10512.5prime Sequence

772 bp (772 high quality bases) assembled on 2010-12-06

> FMO10512.5prime
CAGTCGACATGCGGAAGCTTTGTTCGAGTGAGTCTGTTTGTTCTGGAATT
GAGGTTGAAATTGAAAATAATAACAATAATCATATTCATCATGGCGAGAC
AACGTATCACATGAAAATACTGGTGCCCGCGGTGGCCTCCGGGGCCATCA
TTGGCAAAGGTGGCGAGACGATCGCCTCCCTGCAGAAGGACACGGGTGCT
AGGGTCAAGATGTCCAAGTCGCACGACTTCTACCCAGGCACCACCGAACG
CGTGTGCCTGATCACCGGCTCCACGGAGGCTATCATGGTCGTGATGGAGT
TCATCATGGACAAGATCCGCGAGAAGCCCGACCTGACCAACAAGATCGTC
GATACCGACTCAAAACAGACACAGGAGCGCGACAAGCAGGTCAAGATCCT
GGTGCCCAACTCGACCGCCGGCATGATCATTGGCAAGGGCGGTGCCTTCA
TTAAACAGATCAAGGAGGAGAGCGGCTCCTATGTCCAGATCTCGCAGAAG
CCCACGGATGTGTCGTTGCAGGAGCGCTGCATCACCATCATAGGCGACAA
GGAGAACAATAAGAACGCCTGCAAGATGATCCTCTCGAAGATCGTCGAAT
ATCCCCAGTCGGGCACCTGCCTGACGTATCCTACGCGGACGTCAGCGGCC
CGGTGGCCAACTTTAATCCGACCGGCTCCCCGTACGCCACCAATCAAAAT
GCCCATCAACTCGAGCACCGCTTCGTTGAACTCCACGTTTGGGCACCACG
GATCGGGCGGGTGCAAACTCGG

FMO10512.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:13:23
Subject Length Description Subject Range Query Range Score Percent Strand
ps-RB 4508 CG8144-RB 139..898 9..772 3630 98.8 Plus
ps-RJ 2558 CG8144-RJ 139..898 9..772 3630 98.8 Plus
ps-RR 3624 CG42670-RR 1224..1964 28..772 3535 98.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:13:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9445252..9445766 235..750 2405 99 Plus
3R 32079331 3R 9445043..9445188 93..238 730 100 Plus
3R 32079331 3R 9444011..9444077 28..94 320 98.5 Plus
Blast to na_te.dros performed 2014-11-26 17:13:22
Subject Length Description Subject Range Query Range Score Percent Strand
Idefix 7411 Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). 6718..6751 61..94 107 79.4 Plus

FMO10512.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-06 14:06:55 Download gff for FMO10512.5prime
Subject Subject Range Query Range Percent Splice Strand
ps-RB 132..898 1..772 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:23:00 Download gff for FMO10512.5prime
Subject Subject Range Query Range Percent Splice Strand
ps-RJ 132..898 1..772 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:51:50 Download gff for FMO10512.5prime
Subject Subject Range Query Range Percent Splice Strand
ps-RJ 132..898 1..772 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:51:50 Download gff for FMO10512.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9445044..9445187 94..237 100 -> Plus
3R 9444011..9444076 28..93 98 -> Plus
3R 9445255..9445785 238..772 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:23:00 Download gff for FMO10512.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5270766..5270909 94..237 100 -> Plus
arm_3R 5269733..5269798 28..93 98 -> Plus
arm_3R 5270977..5271507 238..772 98   Plus