FMO10514.5prime Sequence
1144 bp (1023 high quality bases) assembled on 2010-12-06
> FMO10514.5prime
CAGTCGACATGCGGAAGCTTTGTTCGAGTGAGTCAGTTTGTTCTGGAATT
GAGGTTGAAATTGAAAATAATAACAATAATCATATTCATCATGGCGAGAC
AACGTATCACATGAAAATACTGGTGCCCGCGGTGGCCTCCGGGGCCATCA
TTGGCAAAGGTGGCGAGACGATCGCCTCCCTGCAGAAGGACACGGGTGCT
AGGGTCAAGATGTCCAAGTCGCACGACTTCTACCCAGGCACCACCGAACG
CGTGTGCCTGATCACCGGCTCCACGGAGGCTATCATGGTCGTGATGGAGT
TCATCATGGACAAGATCCGCGAGAAGCCCGACCTGACCAACAAGATCGTC
GATACCGACTCAAAACAGACACAGGAGCGCGACAAGCAGGTCAAGATCCT
GGTGCCCAACTCGACCGCCGGCATGATCATTGGCAAGGGTGGTGTCTTCA
TTAAACAGATCAAGGAGGAGAGCGGCTCCTATGTCCAGATCTCGCAGAAG
CCCACGGATGTGTCGTTGCAGGAGCGCTGCATCACCATCATAGGCGACAA
GGAGAACAATAAGAACGCCTGCAAGATGATCCTCTCGAAGATCGTCGAAG
ATCCCCAGTCGGGCACCTGCCTGAACGTATCCTACGCGGACGTCAGCGGC
CCGGTGGCCAACTTTAATCCGACCGGCTCCCCGTACGCCACCAATCAGAA
TGCCATCAACTCGAGCACCGCTTCGTTGAACTCCACGTTGGGCACCACGA
TCGGCGGTGCAAACTCGGCGGCCAGCCTGCTAGTCAACGGCACCGGCATC
AATTTGTCCATCAATCTGGGCTCACCCAATCCGGCGCCCAATCTAGCGTT
GCCACACAGCTGCTCGAGCATATTAAGGTTGCCATGCGCGGCTCTGGCTA
TTCGGAGACCGTAACGAACGAAGTTGTCGCCGCTCTGAGCGTGCTGGCCA
AGTACGGCGTCCTTGGAATGGGCGTGGGTGTGTCGCACAACAACGCCGCC
ACTCAACGCTGGGCAACTTCCTTGGCCGTTACGACGCTGGACAGCAGACA
GCGCTGCCGCATCTTGGCGCCACCGCAGCAATGTGTTCGGGTGCGTTGGC
AAGTTAAATCTGGGAGCAATTAGCCGCAGCGGTGTGCCTCGCAA
FMO10514.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:13:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ps-RB | 4508 | CG8144-RB | 139..1271 | 9..1140 | 5235 | 98 | Plus |
ps-RJ | 2558 | CG8144-RJ | 139..1271 | 9..1140 | 5235 | 98 | Plus |
ps-RR | 3624 | CG42670-RR | 1224..2337 | 28..1140 | 5140 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:13:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9445252..9445898 | 235..880 | 3155 | 99.5 | Plus |
3R | 32079331 | 3R | 9445967..9446226 | 876..1134 | 775 | 90.8 | Plus |
3R | 32079331 | 3R | 9445043..9445188 | 93..238 | 730 | 100 | Plus |
3R | 32079331 | 3R | 9444011..9444077 | 28..94 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:13:46 has no hits.
FMO10514.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-06 14:07:01 Download gff for
FMO10514.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ps-RB | 132..1274 | 1..1142 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:23:16 Download gff for
FMO10514.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ps-RJ | 132..1274 | 1..1142 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:52:06 Download gff for
FMO10514.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ps-RJ | 132..1274 | 1..1142 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:52:06 Download gff for
FMO10514.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9444011..9444076 | 28..93 | 100 | -> | Plus |
3R | 9445044..9445187 | 94..237 | 100 | -> | Plus |
3R | 9445255..9445895 | 238..877 | 99 | -> | Plus |
3R | 9445969..9446234 | 878..1142 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:23:16 Download gff for
FMO10514.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5271691..5271956 | 878..1142 | 92 | | Plus |
arm_3R | 5269733..5269798 | 28..93 | 100 | -> | Plus |
arm_3R | 5270766..5270909 | 94..237 | 100 | -> | Plus |
arm_3R | 5270977..5271617 | 238..877 | 99 | -> | Plus |