FMO10516.5prime Sequence
1140 bp (1033 high quality bases) assembled on 2010-12-06
> FMO10516.5prime
CAGTCGACATGCGGAAGCTTTGTTCGAGTGAGTCAGTTTGTTCTGGAATT
GAGGTTGAAATTGAAAATAATAACAATAATCATATTCATCATGGCGAGAC
AACGTATCACATGAAAATACTGGTGCCCGCGGTGGCCTCCGGGGCCATCA
TTGGCAAAGGTGGCGAGACGATCGCCTCCCTGCAGAAGGACACGGGTGCT
AGGGTCAAGATGTCCAAGTCGCACGACTTCTACCCAGGCACCACCGAACG
CGTGTGCCTGATCACCGGCTCCACGGAGGCTATCATGGTCGTGATGGAGT
TCATCATGGACAAGATCCGCGAGAAGCCCGACCTGACCAACAAGATCGTC
GATACCGACTCAAAACAGACACAGGAGCGCGACAAGCAGGTCAAGATCCT
GGTGCCCAACTCGACCGCCGGCATGATCATTGGCAAGGGCGGTGTCTTCA
TTAAACAGATCAAGGAGGAGAGCGGCTCCTATGTCCAGATCTCGCAGAAG
CCCACGGATGTGTCGTTGCAGGAGCGCTGCATCACCATCATAGGCGACAA
GGAGAACAATAAGAACGCCTGCAAGATGATCCTCTCGAAGATCGTCGAAG
ATCCCCAGTCGGGCACCTGCCTGAACGTATCCTACGCGGACGTCAGCGGC
CCGGTGGCCAACTTTAATCCGACCGGCTCCCCGTACGCCACCAATCAGAA
TGCCATCAACTCGAGCACCGCTTCGTTGAACTCCACGTTGGGCACCACGA
TCGGCGGTGCAAACTCGGCGGCCAGCCTGCTAGTCAACGGCACCGGCATC
AATTTGTCCATCAATCTGGGCTCACCCAATCCGGCGCCCAATCTAGCGGT
TGCCACACAGCTGCTCGAGCATATTAAGGTTGCCATGCGCGGCTCTGGCT
ATTCGGAGACCGTAACGAACGAAGTTGTCGCCGCTTCTGAGCGTGCTGGC
CAAGTACGGCGTCCTTGGAATGGGCCGTGGGGTGTTGTCGCACACCCAAC
GCGCCCACTCAACGCTGGCCAACTTTCCTTGGGGCGTAACGACGCCTTGA
ACCAGCAGACAGCCGCTTGCCCGCCATCTGCGGCCCACCGCCAGCAATGT
TGTTCCGTGTGCCGTTGGCCAGGTAATCCTGGACCAATAT
FMO10516.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:13:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ps-RB | 4508 | CG8144-RB | 139..1254 | 9..1140 | 5145 | 97.9 | Plus |
| ps-RJ | 2558 | CG8144-RJ | 139..1254 | 9..1140 | 5145 | 97.9 | Plus |
| ps-RR | 3624 | CG42670-RR | 1224..2320 | 28..1140 | 5050 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:13:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9445252..9445898 | 235..881 | 3220 | 99.8 | Plus |
| 3R | 32079331 | 3R | 9445043..9445188 | 93..238 | 730 | 100 | Plus |
| 3R | 32079331 | 3R | 9445967..9446214 | 877..1140 | 530 | 87.1 | Plus |
| 3R | 32079331 | 3R | 9444011..9444077 | 28..94 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:13:50 has no hits.
FMO10516.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-06 14:07:02 Download gff for
FMO10516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ps-RB | 132..1254 | 1..1140 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:23:18 Download gff for
FMO10516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ps-RJ | 132..1254 | 1..1140 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:52:09 Download gff for
FMO10516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ps-RJ | 132..1254 | 1..1140 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:52:09 Download gff for
FMO10516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9445969..9446214 | 879..1140 | 91 | | Plus |
| 3R | 9444011..9444076 | 28..93 | 100 | -> | Plus |
| 3R | 9445044..9445187 | 94..237 | 100 | -> | Plus |
| 3R | 9445255..9445895 | 238..878 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:23:18 Download gff for
FMO10516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5271691..5271936 | 879..1140 | 91 | | Plus |
| arm_3R | 5269733..5269798 | 28..93 | 100 | -> | Plus |
| arm_3R | 5270766..5270909 | 94..237 | 100 | -> | Plus |
| arm_3R | 5270977..5271617 | 238..878 | 99 | -> | Plus |
