FMO10520.5prime Sequence
1148 bp (965 high quality bases) assembled on 2010-12-06
> FMO10520.5prime
CAGTCGACATGCGGAAGCTTTGTTCGAGTGAGTCAGTTTGTTCTGGAATT
GAGGTTGAAATTGAAAATAATAACAATAATCATATTCATCATGGCGAGAC
AACGTATCACATGAAAATACTGGTGCCCGCGGTGGCCTCCGGGGCCATCA
TTGGCAAAGGTGGCGAGACGATCGCCTCCCTGCAGAAGGACACGGGTGCT
AGGGTCAAGATGTCCAAGTCGCACGACTTCTACCCAGGCACCACCGAACG
CGTGTGCCTGATCACCGGCTCCACGGAGGCTATCATGGTCGTGATGGAGT
TCATCATGGACAAGATCCGCGAGAAGCCCGACCTGACCAACAAGATCGTC
GATACCGACTCAAAACAGACACAGGAGCGCGACAAGCAGGTCAAGATCCT
GGTGCCCAACTCGACCGCCGGCATGATCATTGGCAAGGGCGGTGCCTTCA
TTAAACAGATCAAGGAGGAGAGCGGCTCCTATGTCCAGATCTCGCAGAAG
CCCACGGATGTGTCGTTGCAGGAGCGCTGCATCACCATCATAGGCGACAA
GGAGAACAATAAGAACGCCTGCAAGATGATCCTCTCGAAGATCGTCGAAG
ATCCCCAGTCGGGCACCTGCCTGAACGTATCCTACGCGGACGTCAGCGGC
CCGGTGGCCAACTTTAATCCGACCGGCTCCCCGTACGCCACCAATCAAAA
TGCCATCAACTCGAGCACCGCTTCGTTGAACTCCACGTTGGGCACCACGA
TCGGCGGTGCAAACTCGGCGGCCAGCCTGCTAGTCAACGGCCCGGCTTCA
ATTTTGTCCATCAATCTGGGCTCACCCAATCCCGGCGCCCAATCTTAGCG
TTTGCCACACAGCTGCTCGAGCATATTAAGGTTGCCATGCGCGGCTCTGG
CTATTCGGAAACCGTAACGAACGAAGTTGTCGCCGCTCTGAGCGTGCTGG
CCAGTACCGCGTCCTTAGAATGGGCGGTTGGTGTGTCGCACACCAACGGC
GCCCCCTTCAACGCTGGCAACTTTCTGGGGCGTAACGACGCTTGGAACAA
CGACAGGCCGCCTGCGCACTTGCAGGCCACCGCCAGCAAATGGTTTCGGA
TGCCGTTGGCCCAGTTAATCTATGAACAAATTGCCTCAACGGTGGGCC
FMO10520.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:13:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ps-RB | 4508 | CG8144-RB | 139..1267 | 9..1145 | 4900 | 96.3 | Plus |
| ps-RJ | 2558 | CG8144-RJ | 139..1267 | 9..1145 | 4900 | 96.3 | Plus |
| ps-RR | 3624 | CG42670-RR | 1224..2333 | 28..1145 | 4805 | 96.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:13:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9445252..9445898 | 235..883 | 3005 | 98.9 | Plus |
| 3R | 32079331 | 3R | 9445043..9445188 | 93..238 | 730 | 100 | Plus |
| 3R | 32079331 | 3R | 9445967..9446129 | 879..1042 | 510 | 91.5 | Plus |
| 3R | 32079331 | 3R | 9444011..9444077 | 28..94 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:13:55 has no hits.
FMO10520.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-06 14:07:04 Download gff for
FMO10520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ps-RB | 132..1236 | 1..1114 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:23:23 Download gff for
FMO10520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ps-RJ | 132..1236 | 1..1114 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:52:13 Download gff for
FMO10520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ps-RJ | 132..1236 | 1..1114 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:52:13 Download gff for
FMO10520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9445044..9445187 | 94..237 | 100 | -> | Plus |
| 3R | 9444011..9444076 | 28..93 | 100 | -> | Plus |
| 3R | 9445255..9445895 | 238..880 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:23:23 Download gff for
FMO10520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5270766..5270909 | 94..237 | 100 | -> | Plus |
| arm_3R | 5269733..5269798 | 28..93 | 100 | -> | Plus |
| arm_3R | 5270977..5271617 | 238..880 | 98 | -> | Plus |
