FMO10529.5prime Sequence
1139 bp (972 high quality bases) assembled on 2010-12-06
> FMO10529.5prime
CAGTCGACATGAAATATCCATTTGTGAACGTTCGCCTGCCGCCCGAGGAA
ACCGTTGAGGTGGCCGCACCGATCTTCGAGGAGGGCATGGAAGTGGAGGT
GTTCACGCGCACGAACGATCGGGAAACCTGCGGCTGGTGGGTGGGCATTA
TTAAAATGCGCAAAGCGGAAATCTATGCGGTCGCGTACATCGGTTTTGAG
ACGTCCTACACCGAAATCTGTGAATTGGGTCGTCTGCGCGCCAAAAACTC
GAATCCGCCAATTACAGCCAAGACCTTCTACCAGTTCACGCTGCCCGTGC
CCGAGGAGTTGCGCGAAGAAGCCCAGAAGGATGGTATACACAAGGAGTTT
CAGCGCACAATCGATGCCGGCGTGTGCAACTACAGTCGCGATCTGGACGC
CCTGATTGTCATCTCCAAGTTTGAGCACACTCAGAAGCGAGCCAGTATGC
TCAAGGATATGCATTTTCGTAATCTCTCACAAAAGGTTATGCTGTTGAAA
AGGACTGAAGAAGCTGCCCGTCAGCTCGAAACAACTAAACTGATGAGCCG
TGGAAACTACGTTGAGGAGTTCCGTGTGCGTGACGATCTCATGGGTTTGG
CGATTGGCTCGCATGGCTCGAATATTCAAGCGGCACGCACTGTGGGACGG
CGTCACCAACATCGAGCTGGAGGAGAAGTCCTGCACATTCAAATCAGCGG
AGAGACCGAGGAGTCTGTGCAGCGTGCCCGCGCGATGCTCGAATACGCCG
AGGAGTTCTTCCAGGTGCCCAGGGAGTTGGTGGGCAAGGTGATTGGCAAG
AATGGGCGCATTATCCAGGAGATTGTGGACAGAGTGTCGTGTTTCGAATC
AAGGTGAGTTGCTATCGCTGGCGACGATGAACAGGATCAGAACATACCAC
GTGAGCTGGCGCATGTTACCTTTTGTGTTCATTGCCACGTGAAAGCATTG
CAAAATGCCAAAGTGCTGTTGGAGTATCATCTGTCGCACCTGAAGAAGTA
AAACAGTTGCGTCAGGAAAAAAATGGAGATGATCAGCAGCTTCCCGCCAT
ATAGGAAATCCTACATGGACTCCACCAAGGCCTTCCATGGAACCGGCGCC
CTCTGAGACGCGGCTACCGCAAGGACATGGATTCGGGTG
FMO10529.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:14:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fmr1-RF | 3773 | CG6203-RF | 177..1302 | 9..1136 | 4910 | 96.4 | Plus |
| Fmr1-RA | 3381 | CG6203-RA | 683..1808 | 9..1136 | 4910 | 96.4 | Plus |
| Fmr1-RG | 4426 | CG6203-RG | 683..1799 | 9..1136 | 4775 | 95.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:14:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10105790..10106100 | 319..9 | 1555 | 100 | Minus |
| 3R | 32079331 | 3R | 10105063..10105370 | 859..553 | 1380 | 98.7 | Minus |
| 3R | 32079331 | 3R | 10105557..10105724 | 487..320 | 840 | 100 | Minus |
| 3R | 32079331 | 3R | 10104879..10105010 | 995..864 | 430 | 93.3 | Minus |
| 3R | 32079331 | 3R | 10105434..10105505 | 553..482 | 360 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 17:14:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7304..7350 | 654..698 | 112 | 76.6 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 8757..8803 | 654..698 | 112 | 76.6 | Plus |
FMO10529.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-06 14:07:09 Download gff for
FMO10529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fmr1-RF | 141..1212 | 2..1075 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:23:41 Download gff for
FMO10529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fmr1-RA | 678..1749 | 2..1075 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:52:32 Download gff for
FMO10529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fmr1-RA | 678..1749 | 2..1075 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:52:32 Download gff for
FMO10529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10104875..10105010 | 864..1001 | 92 | <- | Minus |
| 3R | 10105060..10105369 | 554..863 | 98 | <- | Minus |
| 3R | 10105434..10105501 | 486..553 | 100 | <- | Minus |
| 3R | 10105559..10105724 | 320..485 | 100 | <- | Minus |
| 3R | 10105790..10106103 | 2..319 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:23:41 Download gff for
FMO10529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5930597..5930732 | 864..1001 | 92 | <- | Minus |
| arm_3R | 5930782..5931091 | 554..863 | 98 | <- | Minus |
| arm_3R | 5931156..5931223 | 486..553 | 100 | <- | Minus |
| arm_3R | 5931281..5931446 | 320..485 | 100 | <- | Minus |
| arm_3R | 5931512..5931825 | 2..319 | 98 | | Minus |
