Clone FMO10539 Report

Search the DGRC for FMO10539

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:105
Well:39
Vector:pMK33-CFH-BD
Associated Gene/TranscriptFmr1-RF
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10539.5prime Sequence

850 bp (850 high quality bases) assembled on 2010-12-06

> FMO10539.5prime
CAGTCGACATGAAATATCCATTTGTGAACGTTTGCCTGCCGCCCGAGGAA
ACCGTTGAGGTGGCCGCACCGATCTTCGAGGAGGGCATGGAAGTGGAGGT
GTTCACGCGCACGAACGATCGGGAAACCTGCGGCTGGTGGGTGGGCATTA
TTAAAATGCGCAAAGCGGAAATCTATGCGGTCGCGTACATCGGTTTTGAG
ACGTCCTACACCGAAATCTGTGAATTGGGTCGTCTGCGCGCCAAAAACTC
GAATCCGCCAATTACAGCCAAGACCTTCTACCAGTTCACGCTGCCCGTGC
CCGAGGAGTTGCGCGAAGAAGCCCAGAAGGATGGTATACACAAGGAGTTT
CAGCGCACAATCGATGCCGGCGTGTGCAACTACAGTCGCGATCTGGACGC
CCTGATTGTCATCTCCAAGTTTGAGCACACTCAGAAGCGAGCCATTATGC
TCAAGGATATGCATTTTCGTAATCTCTCACAAAAGGTTATGCTGTTGAAA
AGGACTGAAGAAGCTGCCCGTCAGCTCGAAACAACTAAACTGATGAGCCG
TGGAAACTACGTTGAGGAGTTCCGTGTGCGTGACGATCTCATGGGTTTGG
CGATTGGCTCGCATGGCTCGAATATTCAAGCGGCACGCACTGTGGACGGC
GTCACCAACATCGAGCTGGAGGAGAAGTCCTGCACATTTCAAAATCAGCG
GAGAGACCGAGGAGTCTGTGCAGCGTGCCCGCGCGATGCTCGAATACGCC
GAGGGAGTTCTTCCAAGTGCCCAGGGAGTTGGTGGGCAAGGTGATTGCCA
AGAATGGGCGCATTTATCCAGGAGATTTGTGGACAAGAGTGGCGTGTTTC

FMO10539.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:14:51
Subject Length Description Subject Range Query Range Score Percent Strand
Fmr1-RI 3752 CG6203-RI 177..1014 9..850 4050 99 Plus
Fmr1-RH 2266 CG6203-RH 683..1520 9..850 4050 99 Plus
Fmr1-RG 4426 CG6203-RG 683..1520 9..850 4050 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:14:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10105790..10106100 319..9 1540 99.7 Minus
3R 32079331 3R 10105077..10105370 850..553 1260 98 Minus
3R 32079331 3R 10105557..10105724 487..320 825 99.4 Minus
3R 32079331 3R 10105434..10105505 553..482 360 100 Minus
Blast to na_te.dros performed 2014-11-26 17:14:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7269..7329 616..678 112 66.7 Plus
TART-C 11124 TART-C TARTC 11124bp 8722..8782 616..678 112 66.7 Plus

FMO10539.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-06 14:07:20 Download gff for FMO10539.5prime
Subject Subject Range Query Range Percent Splice Strand
Fmr1-RB 679..1521 2..850 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:24:04 Download gff for FMO10539.5prime
Subject Subject Range Query Range Percent Splice Strand
Fmr1-RG 678..1520 2..850 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:52:57 Download gff for FMO10539.5prime
Subject Subject Range Query Range Percent Splice Strand
Fmr1-RG 678..1520 2..850 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:52:57 Download gff for FMO10539.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10105077..10105369 554..850 97 <- Minus
3R 10105434..10105501 486..553 100 <- Minus
3R 10105559..10105724 320..485 99 <- Minus
3R 10105790..10106103 2..319 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:24:04 Download gff for FMO10539.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5931281..5931446 320..485 99 <- Minus
arm_3R 5930799..5931091 554..850 97 <- Minus
arm_3R 5931156..5931223 486..553 100 <- Minus
arm_3R 5931512..5931825 2..319 98   Minus