FMO10539.5prime Sequence
850 bp (850 high quality bases) assembled on 2010-12-06
> FMO10539.5prime
CAGTCGACATGAAATATCCATTTGTGAACGTTTGCCTGCCGCCCGAGGAA
ACCGTTGAGGTGGCCGCACCGATCTTCGAGGAGGGCATGGAAGTGGAGGT
GTTCACGCGCACGAACGATCGGGAAACCTGCGGCTGGTGGGTGGGCATTA
TTAAAATGCGCAAAGCGGAAATCTATGCGGTCGCGTACATCGGTTTTGAG
ACGTCCTACACCGAAATCTGTGAATTGGGTCGTCTGCGCGCCAAAAACTC
GAATCCGCCAATTACAGCCAAGACCTTCTACCAGTTCACGCTGCCCGTGC
CCGAGGAGTTGCGCGAAGAAGCCCAGAAGGATGGTATACACAAGGAGTTT
CAGCGCACAATCGATGCCGGCGTGTGCAACTACAGTCGCGATCTGGACGC
CCTGATTGTCATCTCCAAGTTTGAGCACACTCAGAAGCGAGCCATTATGC
TCAAGGATATGCATTTTCGTAATCTCTCACAAAAGGTTATGCTGTTGAAA
AGGACTGAAGAAGCTGCCCGTCAGCTCGAAACAACTAAACTGATGAGCCG
TGGAAACTACGTTGAGGAGTTCCGTGTGCGTGACGATCTCATGGGTTTGG
CGATTGGCTCGCATGGCTCGAATATTCAAGCGGCACGCACTGTGGACGGC
GTCACCAACATCGAGCTGGAGGAGAAGTCCTGCACATTTCAAAATCAGCG
GAGAGACCGAGGAGTCTGTGCAGCGTGCCCGCGCGATGCTCGAATACGCC
GAGGGAGTTCTTCCAAGTGCCCAGGGAGTTGGTGGGCAAGGTGATTGCCA
AGAATGGGCGCATTTATCCAGGAGATTTGTGGACAAGAGTGGCGTGTTTC
FMO10539.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:14:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fmr1-RI | 3752 | CG6203-RI | 177..1014 | 9..850 | 4050 | 99 | Plus |
Fmr1-RH | 2266 | CG6203-RH | 683..1520 | 9..850 | 4050 | 99 | Plus |
Fmr1-RG | 4426 | CG6203-RG | 683..1520 | 9..850 | 4050 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:14:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10105790..10106100 | 319..9 | 1540 | 99.7 | Minus |
3R | 32079331 | 3R | 10105077..10105370 | 850..553 | 1260 | 98 | Minus |
3R | 32079331 | 3R | 10105557..10105724 | 487..320 | 825 | 99.4 | Minus |
3R | 32079331 | 3R | 10105434..10105505 | 553..482 | 360 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 17:14:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7269..7329 | 616..678 | 112 | 66.7 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 8722..8782 | 616..678 | 112 | 66.7 | Plus |
FMO10539.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-06 14:07:20 Download gff for
FMO10539.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmr1-RB | 679..1521 | 2..850 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:24:04 Download gff for
FMO10539.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmr1-RG | 678..1520 | 2..850 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:52:57 Download gff for
FMO10539.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmr1-RG | 678..1520 | 2..850 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:52:57 Download gff for
FMO10539.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10105077..10105369 | 554..850 | 97 | <- | Minus |
3R | 10105434..10105501 | 486..553 | 100 | <- | Minus |
3R | 10105559..10105724 | 320..485 | 99 | <- | Minus |
3R | 10105790..10106103 | 2..319 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:24:04 Download gff for
FMO10539.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5931281..5931446 | 320..485 | 99 | <- | Minus |
arm_3R | 5930799..5931091 | 554..850 | 97 | <- | Minus |
arm_3R | 5931156..5931223 | 486..553 | 100 | <- | Minus |
arm_3R | 5931512..5931825 | 2..319 | 98 | | Minus |