FMO10540.5prime Sequence
1124 bp (931 high quality bases) assembled on 2010-12-06
> FMO10540.5prime
CAGTCGACATGAAATATCCATTTGTGAACGTTCGCCTGCCGCCCGAGGAA
ACCGTTGAGGTGGCCGCACCGATCTTCGAGGAGGGCATGGAAGTGGAGGT
GTTCACGCGCACGAACGATCGGGAAACCTGCGGCTGGTGGGTGGGCATTA
TTAAAATGCGCAAAGCGGAAATCTATGCGGTCGCGTACATCGGTTTTGAG
ACGTCCTACACCGAAATCTGTGAATTGGGTCGTCTGCGCGCCAAAAACTC
GAATCCGCCAATTACAGCCAAGACCTTCTACCAGTTCACGCTGCCCGTGC
CCGAGGAGTTGCGCGAAGAAGCCCAGAAGGATGGTATACACAAGGAGTTT
CAGCGCACAATCGATGCCGGCGTGTGCAACTACAGTCGCGATCTGGACGC
CCTGATTGTCATCTCCAAGTTTGAGCACACTCAGAAGCGAGCCAGTATGC
TCAAGGATATGCATTTTCGTAATCTCTCACAAAAGGTTATGCTGTTGAAA
AGGACTGAAGAAGCTGCCCGTCAGCTCGAAACAACTAAACTGATGAGCCG
TGGAAACTACGTTGAGGAGTTCCGTGTGCGTGACGATCTCATGGGTTTGG
CGATTGGCTCGCATGGCTCGAATATTTAAAGCGGCACGCACTGTGGACGG
CGTCACCCAACATCGAGCTGGAGGAGAAGTCCTGCACATTCAAAATCAGC
GGAGAGACCGAGGAGTCTGTGCAGCGTGCCCGCGCGATGCTCGAATACGC
CGAGGAGTTCTTCCAAGGTGCCCAGGGAGTTTGGTGGGCAAAGTAATGGG
CAAGAATGGGGCGCATTATCCAGGAGATTGTGGGACCAGAGTGGCGTGTT
TCGAATCAAAGTGAGTGCTATCGCTGGCGACGATGAACAGGATCAGAACA
TACCACGTTGAGCTGGCGCATGTACCCCTTTGTGTTCATTGCCACCGTGG
AAAGCATTGCAATGCCAAAGTGCTGTTGGAGTATTCAATCTTGTCGCACC
TGAAGGAAGTAAAAAGTTGCGTCAGAAAAAGATGGAAGATTGATCAGCAG
CTTCCCGCCATCCAGGAAATCCTCCATGGGCTCTCCCACAAACTTTCCAA
GTGAAGCCGGCGCCTCTGAGACGC
FMO10540.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:14:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fmr1-RF | 3773 | CG6203-RF | 177..1274 | 9..1120 | 4850 | 96.8 | Plus |
Fmr1-RA | 3381 | CG6203-RA | 683..1780 | 9..1120 | 4850 | 96.8 | Plus |
Fmr1-RG | 4426 | CG6203-RG | 683..1771 | 9..1120 | 4710 | 96.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:14:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10105790..10106100 | 319..9 | 1555 | 100 | Minus |
3R | 32079331 | 3R | 10105060..10105370 | 869..553 | 1195 | 96.2 | Minus |
3R | 32079331 | 3R | 10105557..10105724 | 487..320 | 840 | 100 | Minus |
3R | 32079331 | 3R | 10104897..10105010 | 984..870 | 400 | 95.7 | Minus |
3R | 32079331 | 3R | 10105434..10105505 | 553..482 | 360 | 100 | Minus |
3R | 32079331 | 3R | 10104720..10104786 | 1083..1015 | 200 | 92.8 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:14:54 has no hits.
FMO10540.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-06 14:07:21 Download gff for
FMO10540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmr1-RF | 141..1225 | 2..1099 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:24:07 Download gff for
FMO10540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmr1-RA | 678..1762 | 2..1099 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:53:00 Download gff for
FMO10540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmr1-RA | 678..1762 | 2..1099 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:53:00 Download gff for
FMO10540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10105790..10106103 | 2..319 | 98 | | Minus |
3R | 10104879..10105010 | 870..1005 | 94 | <- | Minus |
3R | 10105060..10105369 | 554..869 | 96 | <- | Minus |
3R | 10105434..10105501 | 486..553 | 100 | <- | Minus |
3R | 10105559..10105724 | 320..485 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:24:07 Download gff for
FMO10540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5930601..5930732 | 870..1005 | 94 | <- | Minus |
arm_3R | 5930782..5931091 | 554..869 | 96 | <- | Minus |
arm_3R | 5931156..5931223 | 486..553 | 100 | <- | Minus |
arm_3R | 5931281..5931446 | 320..485 | 100 | <- | Minus |
arm_3R | 5931512..5931825 | 2..319 | 98 | | Minus |