FMO10542.5prime Sequence
1111 bp (893 high quality bases) assembled on 2010-12-06
> FMO10542.5prime
CAGTCGACATGAAATATCCATTTGTGAACGTTCGCCTGCCGCCCGAGGAA
ACCGTTGAGGTGGCCGCACCGATCTTCGAGGAGGGCATGGAAGTGGAGGT
GTTCACGCGCACGAACGATCGGGAAACCTGCGGCTGGTGGGTGGGCATTA
TTAAAATGCGCAAAGCGGAAATCTATGCGGTCGCGTACATCGGTTTTGAG
ACGTCCTACACCGAAATCTGTGAATTGGGTCGTCTGCGCGCCAAAAACTC
GAATCCGCCAATTACAGCCAAGACCTTCTACCAGTTCACGCTGCCCGTGC
CCGAGGAGTTGCGCGAAGAAGCCCAGAAGGATGGTATACACAAGGAGTTT
CAGCGCACAATCGATGCCGGCGTGTGCAACTACAGTCGCGATCTGGACGC
CCTGATTGTCATCTCCAAGTTTGAGCACACTCAGAAGCGAGCCAGTATGC
TCAAGGATATGCATTTTCGTAATCTCTCACAAAAGGTTATGCTGTTGAAA
AGGACTGAAGAAGCTGCCCGTCAGCTCGAAACAACTAAACTGATGAGCCG
TGGAAACTACGTTGAGGAGTTCCGTGTGCGTGACGATCTCATGGGTTTGG
CGATTGGCTCGCATGGCTCGAATATTCAAGCGGCACGCACTGTGGACGGC
GTCACCAACATCGAGCTGGAGGAGAAGTCCTGCACATTCAAAATCAGCGG
AGAGACCGGGAGTCTGTGCAGCGTGCCGCGCGATGCTCGAATACGCCGAG
GAGTTCTTCCAGGTGCCCAGGGAGTTGGTGGGCAAGGTGATTGGCAAGAA
TGGCGCATTATCCAGGAGATTGTGGACAAGAGTGGCGTGTTTCGAATCAA
GGTGAGTGCTATCGCTGGCGACGATGACAGGATCAGAACATACCACTGAG
CTGGCGCATTTTCCCTTTTGTGTTCTTTGGCACCGGTGAAATCATTGCAA
TGCCAAGTGCTGTTGGGAGTATCTCTGTCGCACCTGAAGGAAGTATATCA
TTTGCGTCAGGAGAAGATGGAGATTGTTCATCAACTTCCCGCCATTCCCA
GGTATTCCTCCAATGGACCTCCCACAAACCTTCCCAGTGTACGCGGCGCT
CCTGAACGCCG
FMO10542.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:15:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fmr1-RF | 3773 | CG6203-RF | 177..1270 | 9..1101 | 4825 | 96.8 | Plus |
| Fmr1-RA | 3381 | CG6203-RA | 683..1776 | 9..1101 | 4825 | 96.8 | Plus |
| Fmr1-RG | 4426 | CG6203-RG | 683..1767 | 9..1101 | 4680 | 96 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:14:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10105790..10106100 | 319..9 | 1555 | 100 | Minus |
| 3R | 32079331 | 3R | 10105060..10105370 | 860..553 | 1405 | 99 | Minus |
| 3R | 32079331 | 3R | 10105557..10105724 | 487..320 | 840 | 100 | Minus |
| 3R | 32079331 | 3R | 10105434..10105505 | 553..482 | 360 | 100 | Minus |
| 3R | 32079331 | 3R | 10104878..10105010 | 990..861 | 220 | 89.6 | Minus |
| 3R | 32079331 | 3R | 10104741..10104798 | 1045..988 | 185 | 87.9 | Minus |
Blast to na_te.dros performed 2014-11-26 17:15:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7269..7350 | 616..698 | 115 | 63.1 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 8722..8803 | 616..698 | 115 | 63.1 | Plus |
FMO10542.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-06 14:07:23 Download gff for
FMO10542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fmr1-RF | 141..1190 | 2..1048 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:24:12 Download gff for
FMO10542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fmr1-RA | 678..1727 | 2..1048 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:53:05 Download gff for
FMO10542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fmr1-RA | 678..1727 | 2..1048 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:53:05 Download gff for
FMO10542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10105060..10105369 | 554..860 | 99 | <- | Minus |
| 3R | 10105434..10105501 | 486..553 | 100 | <- | Minus |
| 3R | 10105559..10105724 | 320..485 | 100 | <- | Minus |
| 3R | 10105790..10106103 | 2..319 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:24:12 Download gff for
FMO10542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5931156..5931223 | 486..553 | 100 | <- | Minus |
| arm_3R | 5931281..5931446 | 320..485 | 100 | <- | Minus |
| arm_3R | 5931512..5931825 | 2..319 | 98 | | Minus |
| arm_3R | 5930782..5931091 | 554..860 | 99 | <- | Minus |
