FMO10543.5prime Sequence
1121 bp (909 high quality bases) assembled on 2010-12-06
> FMO10543.5prime
CAGTCGACATGAAATATCCATTTGTGAACGTTCGCCTGCCGCCCGAGGAA
ACCGTTGAGGTGGCCGCACCGATCTTCGAGGAGGGCATGGAATTGGAGGT
GTTCACGCGCACGAACGATCGGGAAACCTGCGGCTGGTGGGTGGGCATTA
TTAAAATGCGCAAAGCGGAAATCTATGCGGTCGCGTACATCGGTTTTGAG
ACGTCCTACACCGAAATCTGTGAATTGGGTCGTCTGCGCGCCAAAAACTC
GAATCCGCCAATTACAGCCAAGACCTTCTACCAGTTCACGCTGCCCGTGC
CCGAGGAGTTGCGCGAAGAAGCCCAGAAGGATGGTATACACAAGGAGTTT
CAGCGCACAATCGATGCCGGCGTGTGCAACTACAGTCGCGATCTGGACGC
CCTGATTGTCATCTCCAAGTTTGAGCACACTCAGAAGCGAGCCAGTATGC
TCAAGGATATGCATTTTCGTAATCTCTCACAAAAGGTTATGCTGTTGAAA
AGGACTGAAGAAGCTGCCCGTCAGCTCGAAACAACTAAACTGATGAGCCG
TGGAAACTACGTTGAGGAGTTCCGTGTGCGTGACGATCTCATGGGTTTGG
CGATTGGCTCGCATGGCTCGAATATTCAAGCGGCACGCACTGTGGACGGC
GTCACCAACATCGAGCTGGAGGAGAAGTCCTGCACATTCAAAATCAGCGG
AGAGACCGAGGAGTCTGTGCAGCGTGCCCGCGCGATGCTCGAATACGCCG
AGGAGTTCTTCCAGGTGCCCAGGAGTTGGGTGGGCAAGGTGATTGGCAAG
AATGGGCGCATTATCCAGGAGATTGTGGACAGAGTGGCGTGTTTCGAATC
AAGGTGAGTGCTATCGCTGGCGACGATGAACAGGATCAGACATACCACGT
GAGCTGGCGCATGTACCCTTTGTGGTTCATGGCCACGGTGAAGAGCATTG
CAAATGCCAAGTGCTGTTTGGAGTATCATCTGTCGCACCTGAAGGAAGTA
AAACAGTTGCGTCACGAAAGATGGAGATTGATCAGCAGCTTCCCGCCCAT
TCAAGAATCTTCATGGGCTCCCACCAGGAAGCTTCCCGATGACGCGGGCG
CCTCCGAAGCGCGGCTTACGA
FMO10543.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:15:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fmr1-RF | 3773 | CG6203-RF | 177..1281 | 9..1116 | 4950 | 97.2 | Plus |
| Fmr1-RA | 3381 | CG6203-RA | 683..1787 | 9..1116 | 4950 | 97.2 | Plus |
| Fmr1-RG | 4426 | CG6203-RG | 683..1778 | 9..1116 | 4805 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:15:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10105790..10106100 | 319..9 | 1540 | 99.7 | Minus |
| 3R | 32079331 | 3R | 10105060..10105370 | 862..553 | 1445 | 98.4 | Minus |
| 3R | 32079331 | 3R | 10105557..10105724 | 487..320 | 840 | 100 | Minus |
| 3R | 32079331 | 3R | 10104878..10105010 | 995..863 | 415 | 94.1 | Minus |
| 3R | 32079331 | 3R | 10105434..10105505 | 553..482 | 360 | 100 | Minus |
| 3R | 32079331 | 3R | 10104743..10104798 | 1047..993 | 185 | 92.9 | Minus |
Blast to na_te.dros performed 2014-11-26 17:15:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7269..7350 | 616..698 | 115 | 63.1 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 8722..8803 | 616..698 | 115 | 63.1 | Plus |
FMO10543.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-06 14:07:24 Download gff for
FMO10543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fmr1-RF | 141..1200 | 2..1062 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:24:15 Download gff for
FMO10543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fmr1-RA | 678..1737 | 2..1062 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:53:08 Download gff for
FMO10543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fmr1-RA | 678..1737 | 2..1062 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:53:08 Download gff for
FMO10543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10104748..10104796 | 995..1042 | 93 | <- | Minus |
| 3R | 10104879..10105010 | 863..994 | 94 | <- | Minus |
| 3R | 10105060..10105369 | 554..862 | 99 | <- | Minus |
| 3R | 10105434..10105501 | 486..553 | 100 | <- | Minus |
| 3R | 10105559..10105724 | 320..485 | 100 | <- | Minus |
| 3R | 10105790..10106103 | 2..319 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:24:15 Download gff for
FMO10543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5930470..5930518 | 995..1042 | 93 | <- | Minus |
| arm_3R | 5930601..5930732 | 863..994 | 94 | <- | Minus |
| arm_3R | 5930782..5931091 | 554..862 | 99 | <- | Minus |
| arm_3R | 5931156..5931223 | 486..553 | 100 | <- | Minus |
| arm_3R | 5931281..5931446 | 320..485 | 100 | <- | Minus |
| arm_3R | 5931512..5931825 | 2..319 | 98 | | Minus |
