FMO10545.5prime Sequence
1097 bp (832 high quality bases) assembled on 2010-12-06
> FMO10545.5prime
CAGTCGACATGAAATATCCATTTGTGAACGTTCCCCTGCCGCCCGAGGAA
ACCGTTGAGGTGGCCGCACCGATCTTCGAGGAGGGCATGGAAGTGGAGGT
GTTCACGCGCACGAACGATCGGGAAACCTGCGGCTGGTGGGTGGGCATTA
TTAAAATGCGCAAAGCGGAAATCTATGCGGTCGCGTACATCGGTTTTGAG
ACGTCCTACACCGAAATCTGTGAATTGGGTCGTCTGCGCGCCAAAAACTC
GAATCCGCCAATTACAGCCAAGACCTTCTACCAGTTCACGCTGCCCGTGC
CCGAGGAGTTGCGCGAAGAAGCCCAGAAGGATGGTATACACAAGGAGTTT
CATCGCACAATCGATGCCGGCGTGTGCTACTACAGTCGCGATCTGGACGC
CCTGATTGTCATCTCCAAGTTTGAGCACACTCAGAAGCGAGCCAGTATGC
TCAAGGATATGCATTTTCGTAATCTCTCACAAAAGGTTATGCTGTTGAAA
AGGACTGAAGAAGCTGCCCGTCAGCTCGAAACAACTAAACTGATGAGCCG
TGGAAACTACGTTGAGGAGTTCCGTGTGCGTGACGATCTCATGGGTTTGG
CGATTGGCTCGCATGGCTCGAATATTCAAGCGGCTCGCACTGTGGACGGC
GTCACCAACATCGAGCTGGAGGAGAAAGTCCTGCTCATTCAAAATCACGG
AGAGACCGAGGAGTCTGTGCAGCGTGCCCGCGCGATGCTCGAATACGCCG
AGGGAGTTCTTCCAGGTGCCCAGGGAGTTGGTGGGCAAAGTGATGGGCAA
GAATGGGCGCATTATCCAGGAGATTGTGGACAAGAGTGGCGTGTTTCTAA
TCAAGGTGAGTGCTATCGCTGGCGACGATGAACAGGATCAGAATATACCC
ACGTGAGCTGGCGCATGTCCCCTTTGTGTTCATTGGCACCGTGAGAGCAT
TGGATATGCCAAATGCTGTTGAGTATCATCTGTCCCCACCTGAAGGAAGT
AAACCGGTGCGTCAGGAAAAAAATGGAGATTGGTTCACAGCCTTCCCGCC
ATCCGGGAATCCTTCCTTGGGGCTCCCCAACGGAGCCTCCCCGATAC
FMO10545.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:15:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fmr1-RF | 3773 | CG6203-RF | 177..1255 | 9..1091 | 4685 | 96.3 | Plus |
Fmr1-RA | 3381 | CG6203-RA | 683..1761 | 9..1091 | 4685 | 96.3 | Plus |
Fmr1-RG | 4426 | CG6203-RG | 683..1752 | 9..1091 | 4540 | 95.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:15:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10105790..10106100 | 319..9 | 1540 | 99.7 | Minus |
3R | 32079331 | 3R | 10105060..10105370 | 864..553 | 1340 | 97.4 | Minus |
3R | 32079331 | 3R | 10105557..10105724 | 487..320 | 810 | 98.8 | Minus |
3R | 32079331 | 3R | 10105434..10105505 | 553..482 | 360 | 100 | Minus |
3R | 32079331 | 3R | 10104889..10105010 | 984..865 | 355 | 93.5 | Minus |
Blast to na_te.dros performed 2014-11-26 17:15:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7269..7334 | 616..683 | 110 | 64.7 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 8722..8787 | 616..683 | 110 | 64.7 | Plus |
FMO10545.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-06 14:07:25 Download gff for
FMO10545.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmr1-RF | 141..1158 | 2..1020 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:24:20 Download gff for
FMO10545.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmr1-RA | 678..1695 | 2..1020 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:53:13 Download gff for
FMO10545.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmr1-RA | 678..1695 | 2..1020 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:53:13 Download gff for
FMO10545.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10104873..10105010 | 865..1000 | 91 | <- | Minus |
3R | 10105060..10105369 | 554..864 | 97 | <- | Minus |
3R | 10105434..10105501 | 486..553 | 100 | <- | Minus |
3R | 10105559..10105724 | 320..485 | 98 | <- | Minus |
3R | 10105790..10106103 | 2..319 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:24:20 Download gff for
FMO10545.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5930595..5930732 | 865..1000 | 91 | <- | Minus |
arm_3R | 5930782..5931091 | 554..864 | 97 | <- | Minus |
arm_3R | 5931156..5931223 | 486..553 | 100 | <- | Minus |
arm_3R | 5931281..5931446 | 320..485 | 98 | <- | Minus |
arm_3R | 5931512..5931825 | 2..319 | 98 | | Minus |