FMO10550.5prime Sequence
612 bp (612 high quality bases) assembled on 2010-12-06
> FMO10550.5prime
CAGTCGACATGAAATATCCATTTGTGAACGTTCGCCTGCCGCCCGAGGAA
ACCGTTGAGGTGGCCGCACCGATCTTCGAGGAGGGCATGGAAGTGGAGGT
GTTCACGCGCACGAACGATCGGGAAACCTGCGGCTGGTGGGTGGGCATTA
TTAAAATGCGCAAAGCGGAAATCTATGCGGTCGCGTACATCGGTTTTGAG
ACGTCCTACACCGAAATCTGTGAATTGGGTCGTCTGCGCGCCAAAAACTC
GAATCCGCCAATTACAGCCAAGACCTTCTACCAGTTCACGCTGCCCGTGC
CCGAGGAGTTGCGCGAAGAAGCCCAGAAGGATGGTATACACAAGGAGTTT
CAGCGCACAATCGATGCCGGCGTGTGCAACTACAGTCGCGATCTGGACGC
CCTGATTGTCATCTCCAAGTTTGAGCACACTCAGAAGCGAGCCAGTATGC
TCAAGGATATGCATTTTCGTAATCTCTCACAAAAGGTTATGCTGTTGAAA
AGGACTGAGGAAGCTGCCCGTCAGCTCGAAACAACTAAACTGATGAGCCG
TGGAAACTACGTTGAGGAGTTCCGTGTGCGTGACGATCTCATGGGTTTTG
GCGATTGGCTCG
FMO10550.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:15:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fmr1-RI | 3752 | CG6203-RI | 177..779 | 9..612 | 2980 | 99.7 | Plus |
| Fmr1-RH | 2266 | CG6203-RH | 683..1285 | 9..612 | 2980 | 99.7 | Plus |
| Fmr1-RG | 4426 | CG6203-RG | 683..1285 | 9..612 | 2980 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:15:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10105790..10106100 | 319..9 | 1555 | 100 | Minus |
| 3R | 32079331 | 3R | 10105557..10105724 | 487..320 | 840 | 100 | Minus |
| 3R | 32079331 | 3R | 10105434..10105505 | 553..482 | 345 | 98.6 | Minus |
| 3R | 32079331 | 3R | 10105312..10105370 | 612..553 | 250 | 98.3 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:15:27 has no hits.
FMO10550.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-06 14:07:30 Download gff for
FMO10550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fmr1-RB | 679..1286 | 2..612 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:24:33 Download gff for
FMO10550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fmr1-RG | 678..1285 | 2..612 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:53:27 Download gff for
FMO10550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fmr1-RG | 678..1285 | 2..612 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:53:27 Download gff for
FMO10550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10105312..10105369 | 554..612 | 98 | <- | Minus |
| 3R | 10105434..10105501 | 486..553 | 98 | <- | Minus |
| 3R | 10105559..10105724 | 320..485 | 100 | <- | Minus |
| 3R | 10105790..10106103 | 2..319 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:24:33 Download gff for
FMO10550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5931034..5931091 | 554..612 | 98 | <- | Minus |
| arm_3R | 5931156..5931223 | 486..553 | 98 | <- | Minus |
| arm_3R | 5931281..5931446 | 320..485 | 100 | <- | Minus |
| arm_3R | 5931512..5931825 | 2..319 | 98 | | Minus |
