FMO10554.5prime Sequence
445 bp (443 high quality bases) assembled on 2010-12-06
> FMO10554.5prime
CAGTCGACATGAAATATCCATTTGTGAACGTTCGCCTGCCGCCCGAGGAA
ACCGTTGAGGTGGCCGCACCGATCTTCGAGGAGGGCATGGAAATGGAGGT
GTTCACGCGCACGAACGATCGGGAAACCTGCGGCTGGTGGGTGGGCATTA
TTAAAATGCGCAAAGCGGAAATCTATGCGGTCGCGTACATCGGTTTTGAG
ACGTCCTACACCGAAATCTGTGAATTGGGTCGTCTGCGCGCCAAAAACTC
GAATCCGCCAATTACAGCCAAGACCTTCTACCAGTTCACGCTGCCCGTGC
CCGAGGAGTTGCGCGAAGAAGCCCAGAAGGATGGTATACACAAGGAGTTT
CAGCGCACAATCGATGCCGGCGTGTGCAACTACAGTCGCGATCTGGACGC
CCTGATTGTCTTCTCCAAGTTTGAGCACACTCAGAAGCGAGCCAG
FMO10554.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:15:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fmr1-RI | 3752 | CG6203-RI | 177..613 | 9..445 | 2155 | 99.5 | Plus |
| Fmr1-RH | 2266 | CG6203-RH | 683..1119 | 9..445 | 2155 | 99.5 | Plus |
| Fmr1-RG | 4426 | CG6203-RG | 683..1119 | 9..445 | 2155 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:15:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10105790..10106100 | 319..9 | 1540 | 99.7 | Minus |
| 3R | 32079331 | 3R | 10105599..10105724 | 445..320 | 615 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:15:40 has no hits.
FMO10554.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-06 14:07:34 Download gff for
FMO10554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fmr1-RE | 141..582 | 2..445 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:24:43 Download gff for
FMO10554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fmr1-RG | 678..1119 | 2..445 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:53:39 Download gff for
FMO10554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fmr1-RG | 678..1119 | 2..445 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:53:39 Download gff for
FMO10554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10105599..10105724 | 320..445 | 99 | <- | Minus |
| 3R | 10105790..10106103 | 2..319 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:24:43 Download gff for
FMO10554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5931321..5931446 | 320..445 | 99 | <- | Minus |
| arm_3R | 5931512..5931825 | 2..319 | 98 | | Minus |
