FMO10555.5prime Sequence
1173 bp (986 high quality bases) assembled on 2010-12-06
> FMO10555.5prime
CAGTCGACATGAAATATCCATTTGTGAACGTTCGCCTGCCGCCCGAGGAA
ACCGTTGAGGTGGCCGCACCGATCTTCGAGGAGGGCATGGAAGTGGAGGT
GTTCACGCGCACGAACGATCGGGAAACCTGCGGCTGGTGGGTGGGCATTA
TTAAAATGCGCAAAGCGGAAATCTATGCGGTCGCGTACATCGGTTTTGAG
ACGTCCTACACCGAAATCTGTGAATTGGGTCGTCTGCGCGCCAAAAACTC
GAATCCGCCAATTACAGCCAAGACCTTCTACCAGTTCACGCTGCCCGTGC
CCGAGGAGTTGCGCGAAGAAGCCCAGAAGGATGGTATACACAAGGAGTTT
CAGCGCACAATCGATGCCGGCGTGTGCAACTACAGTCGCGATCTGGACGC
CCTGATTGTCATCTCCAAGTTTGAGCACACTCAGAAGCGAGCCAGTATGC
TCAAGGATATGCATTTTCGTAATCTCTCACAAAAGGTTATGCTGTTGAAA
AGGACTGAAGAAGCTGCCCGTCAGCTCGAAACAACTAAACTGATGAGCCG
TGGAAACTACGTTGAGGAGTTCCGTGTGCGTGACGATCTCATGGGTTTGG
CGATTGGCTCGCATGGCTCGAATATTCAAGCGGCACGCACTGTGGACGGC
GTCACCCAACATCGAGCTGGAGGAGAAGTCCTGCACATTCAAAATCAGCG
GAGAGACCGAGGAGTCTGTGCAGCGTGCCCGCGCGATGCTCGAATACGCC
GAGGAGTTCTTCCAGGTGCCCAGGGAGTTGGTGGGCAAGGTGATTGGCAA
GAATGGGCGCATTATCCCAGGAGATTGTGGACAGAGTGGCGTGTTTCGAA
TCAGGTGAGTGCTATCGCTGGCGACGATGAACAAGATCAGAACATACCAC
GTGAGCTGGCGCATGTACCCTTTTGTGTTCATTGGCCACGTGGAGAGCAT
TGCAAATGCCCAAAGTGCTGTTGGAGTATCATCTGTCGCACCTGAGGAAG
TAGAACAGTTTGCGTCAAGGAAAAGATTGAAAATTGAATCAGCAGCTTTC
CGCGCATCCAGTAATCTCTCCATGGGCTCCACACACAGAGCTTTCCCAGG
GACCGCCGGGCGCTCCTGAAGCGCCGGCTATCAGCAAGTGAACAATTGAA
TTCGGGTGCGCGCTCTTATTTGC
FMO10555.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:15:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fmr1-RF | 3773 | CG6203-RF | 177..1261 | 9..1103 | 4950 | 97.6 | Plus |
| Fmr1-RA | 3381 | CG6203-RA | 683..1767 | 9..1103 | 4950 | 97.6 | Plus |
| Fmr1-RG | 4426 | CG6203-RG | 683..1758 | 9..1103 | 4830 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:15:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10105790..10106100 | 319..9 | 1555 | 100 | Minus |
| 3R | 32079331 | 3R | 10105060..10105370 | 863..553 | 1365 | 98.7 | Minus |
| 3R | 32079331 | 3R | 10105557..10105724 | 487..320 | 840 | 100 | Minus |
| 3R | 32079331 | 3R | 10104881..10105010 | 995..864 | 515 | 96.2 | Minus |
| 3R | 32079331 | 3R | 10105434..10105505 | 553..482 | 360 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:15:43 has no hits.
FMO10555.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-06 14:07:35 Download gff for
FMO10555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fmr1-RC | 678..1674 | 2..1010 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:24:46 Download gff for
FMO10555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fmr1-RA | 678..1683 | 2..1010 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:53:41 Download gff for
FMO10555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fmr1-RA | 678..1683 | 2..1010 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:53:41 Download gff for
FMO10555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10104879..10105010 | 864..996 | 95 | <- | Minus |
| 3R | 10105060..10105369 | 554..863 | 98 | <- | Minus |
| 3R | 10105434..10105501 | 486..553 | 100 | <- | Minus |
| 3R | 10105559..10105724 | 320..485 | 100 | <- | Minus |
| 3R | 10105790..10106103 | 2..319 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:24:46 Download gff for
FMO10555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5930601..5930732 | 864..996 | 95 | <- | Minus |
| arm_3R | 5930782..5931091 | 554..863 | 98 | <- | Minus |
| arm_3R | 5931156..5931223 | 486..553 | 100 | <- | Minus |
| arm_3R | 5931281..5931446 | 320..485 | 100 | <- | Minus |
| arm_3R | 5931512..5931825 | 2..319 | 98 | | Minus |
