FMO10560.5prime Sequence
1144 bp (886 high quality bases) assembled on 2010-12-06
> FMO10560.5prime
CAGTCGACATGAAATATCCATTTGTGAACGTTTGCCTGCCGCCCGAGGAA
ACCGTTGAGGTGGCCGCACCGATCTTCGAGGAGGGCATGGAAGTGGAGGT
GTTCACGCGCACGAACGATCGGGAAACCTGCGGCTGGTGGGTGGGCATTA
TTAAAATGCGCAAAGCGGAAATCTATGCGGTCGCGTACATCGGTTTTGAG
ACGTCCTACACCGAAATCTGTGAATTGGGTCGTCTGCGCGCCAAAAACTC
GAATCCGCCAATTACAGCCAAGACCTTCTACCAGTTCACGCTGCCCGTGC
CCGAGGAGTTGCGCGAAGAAGCCCAGAAGGATGGTATACACAAGGAGTTT
CAGCGCACAATCGATGCCGGCGTGTGCAACTACAGTCGCGATCTGGACGC
CCTGATTGTCATCTCCAAGTTTGAGCACACTCAGAAGCGAGCCAGTATGC
TCAAGGATATGCATTTTCGTAATCTCTCACAAAAGGTTATGCTGTTGAAA
AGGACTGAAGAAGCTGCCCGTCAGCTCGAAACAACTAAACTGATGAGCCG
TGGAAACTACGTTGAGGAGTTCCGTGTGCGTGACGATCTCATGGGTTTGG
CGATTGGCTCGCATGGCTCGAAATATTCAAGCGGCACGCACTGTGGACGG
CGTCACCAACATCGAGCTGGAGGAGAAGTCCTGCACATTCAAAATCAGCG
GAGAGACCGAGGAGTCTGTGCAGCGTGCCCGCGCGATGCTCGAATACGCC
AAGGAGTTCTTCCAGGTGCCCAGGGAGTTGGTGGGGCAAGGTGATTGGCA
AGAAATGGGCGCAATATCCAGGAGATTGTGGGACAAGATTGGCGTGTTTC
GAATCAGGTGAGTGCTATCGCTGGCGACGATGAACAGGATCAGAACATAC
CACGTGAGCTGGGCGGCATGTACCCTTTTGTGGTTCATGGGCACGGTGAA
GAGCATTGCAAATGCCAAAGTGCTGTTGGAGTATCATCTGTTCGCACCTG
AAGGAAGTAAACATTGCGTCAGAGAAGATGGAGATGATCCGCCGCCTTCC
CCCATCAGGATCCTCATGGTCCTCCCCACGAAGTTCCCAATGAAGCCGCG
CTCTGGAAGCCGGCTCCGCAGTGACATTGAGTCTGGTGCCTCCT
FMO10560.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:15:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fmr1-RF | 3773 | CG6203-RF | 177..1305 | 9..1139 | 4805 | 96.2 | Plus |
Fmr1-RA | 3381 | CG6203-RA | 683..1811 | 9..1139 | 4805 | 96.2 | Plus |
Fmr1-RG | 4426 | CG6203-RG | 683..1802 | 9..1139 | 4685 | 95.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:15:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10105790..10106100 | 319..9 | 1540 | 99.7 | Minus |
3R | 32079331 | 3R | 10105060..10105370 | 866..553 | 1280 | 97.5 | Minus |
3R | 32079331 | 3R | 10105557..10105724 | 487..320 | 840 | 100 | Minus |
3R | 32079331 | 3R | 10104878..10105010 | 1004..867 | 420 | 92 | Minus |
3R | 32079331 | 3R | 10105434..10105505 | 553..482 | 360 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 17:15:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7271..7350 | 619..699 | 114 | 63.4 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 8724..8803 | 619..699 | 114 | 63.4 | Plus |
FMO10560.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-06 14:07:28 Download gff for
FMO10560.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmr1-RF | 141..1167 | 2..1035 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:24:28 Download gff for
FMO10560.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmr1-RA | 678..1704 | 2..1035 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:53:22 Download gff for
FMO10560.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmr1-RA | 678..1704 | 2..1035 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:53:22 Download gff for
FMO10560.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10105559..10105724 | 320..485 | 100 | <- | Minus |
3R | 10104762..10104796 | 1004..1035 | 91 | <- | Minus |
3R | 10104879..10105010 | 867..1003 | 94 | <- | Minus |
3R | 10105060..10105369 | 554..866 | 97 | <- | Minus |
3R | 10105434..10105501 | 486..553 | 100 | <- | Minus |
3R | 10105790..10106103 | 2..319 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:24:28 Download gff for
FMO10560.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5930484..5930518 | 1004..1035 | 91 | <- | Minus |
arm_3R | 5930601..5930732 | 867..1003 | 94 | <- | Minus |
arm_3R | 5930782..5931091 | 554..866 | 97 | <- | Minus |
arm_3R | 5931156..5931223 | 486..553 | 100 | <- | Minus |
arm_3R | 5931281..5931446 | 320..485 | 100 | <- | Minus |
arm_3R | 5931512..5931825 | 2..319 | 98 | | Minus |