FMO10566.5prime Sequence
1142 bp (1013 high quality bases) assembled on 2010-12-06
> FMO10566.5prime
CAGTCGACATGAAATATCCATTTGTGAACGTTCGCCTGCCGCCCGAGGAA
ACCGTTGAGGTGGCCGCACCGATCTTCGAGGAGGGCATGGAAGTGGAGGT
GTTCACGCGCACGAACGATCGGGAAACCTGCGGCTGGTGGGTGGGCATTA
TTAAAATGCGCAAAGCGGAAATCTATGCGGTCGCGTACATCGGTTTTGAG
ACGTCCTACACCGAAATCTGTGAATTGGGTCGTCTGCGCGCCAAAAACTC
GAATCCGCCAATTACAGCCAAGACCTTCTACCAGTTCACGCTGCCCGTGC
CCGAGGAGTTGCGCGAAGAAGCCCAGAAGGATGGTATACACAAGGAGTTT
CAGCGCACAATCGATGCCGGCGTGTGCAACTACAGTCGCGATCTGGACGC
CCTGATTGTCATCTCCAAGTTTGAGCACACTCAGAAGCGATTTTTTTATG
CTCAAGGATATGCATTTTCGTAATCTCTCACAAAAGGTTATGCTGTTGAA
AAGGACTGAAGAAGCTGCCCGTCAGCTCGAAACAACTAAACTGATGAGCC
GTGGAAACTACGTTGAGGAGTTCCGTGTGCGTGACGATCTCATGGGTTTG
GCGATTGGCTCGCATGGCTCGAATATTCAAGCGGCACGCACTGTGGACGG
CGTCACCAACATCGAGCTGGAGGAGAAGTCCTGCACATTCAAAATCAGCG
GAGAGACCGAGGAGTCTGTGCAGCGTGCCCGCGCGATGCTCGAATACGCC
GAGGAGTTCTTCCAGGTGCCCAGGGAGTTGGTGGGCAAGGTGATTGGCAA
GAATGGGCGCATTATCCAGGAGATTGTGGACAAGAGTGGCGTGTTTCGAA
TCAAGGTGAGTGCTATCGCTGGCGACGATGAACAGGATCAGAACATACCA
CGTGAGCTGGCGCATGTACCCTTTGTGTTCATTGGCACCGTGAGAGCATT
GCCAAATGCCAAGTGCTGTGGAGTATCATCTGTCGCACCTTGAAGAAGTA
GAACAGTTGCGTCAGAAAAGAATGGAGATTGATCAGCAGCTTCGCGCCAT
CAGAATCCTCATGGACTTCACACACAGAGCTTCCAGTGACGCGGGCTCTG
AACCCGGCTACAGCAATGACATGGATCGGTGCGCTCTATGGC
FMO10566.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:16:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fmr1-RF | 3773 | CG6203-RF | 177..1313 | 9..1140 | 5125 | 97.6 | Plus |
| Fmr1-RA | 3381 | CG6203-RA | 683..1819 | 9..1140 | 5125 | 97.6 | Plus |
| Fmr1-RG | 4426 | CG6203-RG | 683..1810 | 9..1140 | 4980 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:16:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10105060..10105370 | 864..554 | 1555 | 100 | Minus |
| 3R | 32079331 | 3R | 10105790..10106100 | 319..9 | 1555 | 100 | Minus |
| 3R | 32079331 | 3R | 10105557..10105724 | 488..320 | 720 | 96.4 | Minus |
| 3R | 32079331 | 3R | 10104883..10105010 | 990..865 | 465 | 94.5 | Minus |
| 3R | 32079331 | 3R | 10105434..10105505 | 554..483 | 360 | 100 | Minus |
| 3R | 32079331 | 3R | 10104647..10104796 | 1140..995 | 265 | 87.5 | Minus |
Blast to na_te.dros performed 2014-11-26 17:16:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7269..7350 | 617..699 | 115 | 63.1 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 8722..8803 | 617..699 | 115 | 63.1 | Plus |
FMO10566.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-06 14:07:42 Download gff for
FMO10566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fmr1-RF | 141..1283 | 2..1142 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:25:09 Download gff for
FMO10566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fmr1-RA | 678..1820 | 2..1142 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:54:06 Download gff for
FMO10566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fmr1-RA | 678..1820 | 2..1142 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:54:06 Download gff for
FMO10566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10104879..10105010 | 865..994 | 95 | <- | Minus |
| 3R | 10105060..10105369 | 555..864 | 100 | <- | Minus |
| 3R | 10105434..10105501 | 487..554 | 100 | <- | Minus |
| 3R | 10105559..10105724 | 320..486 | 96 | <- | Minus |
| 3R | 10105790..10106103 | 2..319 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:25:09 Download gff for
FMO10566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5931512..5931825 | 2..319 | 98 | | Minus |
| arm_3R | 5930601..5930732 | 865..994 | 95 | <- | Minus |
| arm_3R | 5930782..5931091 | 555..864 | 100 | <- | Minus |
| arm_3R | 5931156..5931223 | 487..554 | 100 | <- | Minus |
| arm_3R | 5931281..5931446 | 320..486 | 96 | <- | Minus |
