FMO10580.5prime Sequence
1152 bp (1054 high quality bases) assembled on 2010-12-06
> FMO10580.5prime
CAGTCGACATGAAATATCCATTTGTGAACGTTCGCCTGCCGCCCGAGGAA
ACCGTTGAGGTGGCCGCACCGATCTTCGAGGAGGGCATGGAAGTGGAGGT
GTTCACGCGCACGAACGATCGGGAAACCTGCGGCTGGTGGGTGGGCATTA
TTAAAATGCGCAAAGCGGAAATCTATGCGGTCGCGTACATCGGTTTTGAG
ACGTCCTACACCGAAATCTGTGAATTGGGTCGTCTGCGCGCCAAAAACTC
GAATCCGCCAATTACAGCCAAGACCTTCTACCAGTTCACGCTGCCCGTGC
CCGAGGAGTTGCGCGAAGAAGCCCAGAAGGATGGTATACACAAGGAGTTT
CAGCGCACAATCGATGCCGGCGTGTGCAACTACAGTCGCGATCTGGACGC
CCTGATTGTCATCTCCAAGTTTGAGCACACTCAGAAGCGTTTTTAGTATG
CTCAAGGATATGCATTTTCGTAATCTCTCACAAAAGGTTATGCTGTTGAA
AAGGACTGAAGAAGCTGCCCGTCAGCTCGAAACAACTAAACTGATGAGCC
GTGGAAACTACGTTGAGGAGTTCCGTGTGCGTGACGATCTCATGGGTTTG
GCGATTGGCTCGCATGGCTCGAATATTCAAGCGGCACGCACTGTGGACGG
CGTCACCAACATCGAGCTGGAGGAGAAGTCCTGCACATTCAAAATCAGCG
GAGAGACCGAGGAGTCTGTGCAGCGTGCCCGCGCGATGCTCGAATACGCC
GAGGAGTTCTTCCAGGTGCCCAGGGAGTTGGTGGGCAAGGTGATTGGCAA
GAATGGGCGCATTATCCAGGAGATTGTGGACAAGAGTGGCGTGTTTCGAA
TCAAGGTGAGTGCTATCGCTGGCGACGATGAACAGGATCAGAACATACCA
CGTGAGCTGGCGCATGTACCCTTTGTGTTCATTGGCACCGTGAGAGCATT
GCAAATGCCAAAGTGCTGTTGGAGTATCATCTGTCCCCACCTGAAGGAAG
TAGAACAGTTGCGTCAGGAGAAGATGGAGATGATCAGCAGCTTCCCGCCA
TCCAGGATCCCTCATGGGCCTCCACACAAGAGCCTTCCAGGTGACGCGGC
GCCTTCTGAAGCGCGCTCACAGCATGCCAATTGAATTCGGGTGCCTCTAT
TG
FMO10580.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:16:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fmr1-RF | 3773 | CG6203-RF | 177..1268 | 9..1102 | 5135 | 98.4 | Plus |
| Fmr1-RA | 3381 | CG6203-RA | 683..1774 | 9..1102 | 5135 | 98.4 | Plus |
| Fmr1-RG | 4426 | CG6203-RG | 683..1765 | 9..1102 | 4990 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:16:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10105060..10105370 | 864..554 | 1555 | 100 | Minus |
| 3R | 32079331 | 3R | 10105790..10106100 | 319..9 | 1555 | 100 | Minus |
| 3R | 32079331 | 3R | 10105557..10105724 | 488..320 | 735 | 97 | Minus |
| 3R | 32079331 | 3R | 10104889..10105010 | 985..865 | 560 | 99.2 | Minus |
| 3R | 32079331 | 3R | 10105434..10105505 | 554..483 | 360 | 100 | Minus |
| 3R | 32079331 | 3R | 10104714..10104798 | 1078..995 | 270 | 90.6 | Minus |
Blast to na_te.dros performed 2014-11-26 17:16:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7269..7350 | 617..699 | 115 | 63.1 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 8722..8803 | 617..699 | 115 | 63.1 | Plus |
FMO10580.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-06 14:07:54 Download gff for
FMO10580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fmr1-RF | 141..1256 | 2..1124 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:25:37 Download gff for
FMO10580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fmr1-RA | 678..1793 | 2..1124 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:54:36 Download gff for
FMO10580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fmr1-RA | 678..1793 | 2..1124 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:54:36 Download gff for
FMO10580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10104879..10105010 | 865..996 | 97 | <- | Minus |
| 3R | 10105060..10105369 | 555..864 | 100 | <- | Minus |
| 3R | 10105434..10105501 | 487..554 | 100 | <- | Minus |
| 3R | 10105559..10105724 | 320..486 | 97 | <- | Minus |
| 3R | 10105790..10106103 | 2..319 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:25:37 Download gff for
FMO10580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5930601..5930732 | 865..996 | 97 | <- | Minus |
| arm_3R | 5930782..5931091 | 555..864 | 100 | <- | Minus |
| arm_3R | 5931156..5931223 | 487..554 | 100 | <- | Minus |
| arm_3R | 5931281..5931446 | 320..486 | 97 | <- | Minus |
| arm_3R | 5931512..5931825 | 2..319 | 98 | | Minus |
