Clone FMO10587 Report

Search the DGRC for FMO10587

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:105
Well:87
Vector:pMK33-CFH-BD
Associated Gene/TranscriptFmr1-RF
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10587.5prime Sequence

1123 bp (858 high quality bases) assembled on 2010-12-06

> FMO10587.5prime
CAGTCGACATGAAATATCCATTTGTGAACGTTCGCCTGCCGCCCGAGGAA
ACCGTTGAGGTGGCCGCACCGATCTTCGAGGAGGGCATGGAAGTGGAGGT
GTTCACGCGCACGAACGATCGGGAAACCTGCGGCTGGTGGGTGGGCATTA
TTAAAATGCGCAAAGCGGAAATCTATGCGGTCGCGTACATCGGTTTTGAG
ACGTCCTACACCGAAATCTGTGAATTGGGTCGTCTGCGCGCCAAAAACTC
GAATCCGCCAATTACAGCCAAGACCTTCTACCAGTTCACGCTGCCCGTGC
CCGAGGAGTTGCGCGAAGAAGCCCAGAAGGATGGTATACACAAGGAGTTT
CAGCGCACAATCGATGCCGGCGTGTGCAACTACAGTCGCGATCTGGACGC
CCTGATTGTCATCTCCAAGTTTGAGCACACTCAGAAGCGAGCCATTATGC
TCAAGGATATGCATTTTCGTAATCTCTCACAAAAGGTTATGCTGTTGAAA
AGGACTGAAGAAGCTGCCCGTCAGCTCGAAACAACTAAACTGATGAGCCG
TGGAAACTACGTTGAGGAGTTCCGTGTGCGTGACGATCTCATGGGTTTGG
CGATTGGCTCGCATGGCTCGAATATTCAAGCGGCACGCACTGTGGACGGC
GTCACCAACATCGAGCTGGAGGAGAGTCCTGCACATTCAAAAATCAGCGG
AGAGACCGAGGAGTCTGTGCAGCGTGCCCGCGCGATGCTCGAATACGCCG
AGGAGTTCTTCCAGGTGCCAGGGAGTTGGTGGGCAAGGTGATTGGGCAAG
AATGGGCGCATTTATCCAGGAGATTGTGGACAAGAGTTGCGTGTTTCCAA
TCAAGGTGAGTGCTATCGCTGGCGACGATGAACAGGATCCAGAACATACC
ACGTGGAGCTGGCGCATGTACCCTTTGTGGTTCATTGGCACCGTGAGAGC
ATTGCAAATGCCAAGTGCTGTTGGAGTATCATCTGTCGCACTTGAAGGAA
GTAGAACAGTTGTCGTCAGGAAAAAATGAAGATGGATCAACAGCTTCCCG
GCATCCAGGGAATCCTCATGGGCTTACACCAGAGCTTCCCAATGAAACGG
GGCCTCTTGAATGCGCCTACAGC

FMO10587.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:17:14
Subject Length Description Subject Range Query Range Score Percent Strand
Fmr1-RF 3773 CG6203-RF 177..1260 9..1095 4895 97.4 Plus
Fmr1-RA 3381 CG6203-RA 683..1766 9..1095 4895 97.4 Plus
Fmr1-RG 4426 CG6203-RG 683..1757 9..1095 4750 96.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:17:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10105790..10106100 319..9 1555 100 Minus
3R 32079331 3R 10105060..10105370 864..553 1290 97.8 Minus
3R 32079331 3R 10105557..10105724 487..320 825 99.4 Minus
3R 32079331 3R 10104878..10105010 998..865 415 95.6 Minus
3R 32079331 3R 10105434..10105505 553..482 360 100 Minus
Blast to na_te.dros performed on 2014-11-26 17:17:13 has no hits.

FMO10587.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-06 14:08:00 Download gff for FMO10587.5prime
Subject Subject Range Query Range Percent Splice Strand
Fmr1-RF 141..1147 2..1012 98 == Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:25:54 Download gff for FMO10587.5prime
Subject Subject Range Query Range Percent Splice Strand
Fmr1-RA 678..1684 2..1012 98 == Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:54:55 Download gff for FMO10587.5prime
Subject Subject Range Query Range Percent Splice Strand
Fmr1-RA 678..1684 2..1012 98 == Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:54:55 Download gff for FMO10587.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10104879..10105010 865..997 95 <- Minus
3R 10105060..10105369 554..864 97 <- Minus
3R 10105434..10105501 486..553 100 <- Minus
3R 10105559..10105724 320..485 99 <- Minus
3R 10105790..10106103 2..319 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:25:54 Download gff for FMO10587.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5931281..5931446 320..485 99 <- Minus
arm_3R 5930601..5930732 865..997 95 <- Minus
arm_3R 5930782..5931091 554..864 97 <- Minus
arm_3R 5931156..5931223 486..553 100 <- Minus
arm_3R 5931512..5931825 2..319 98   Minus