FMO10587.5prime Sequence
1123 bp (858 high quality bases) assembled on 2010-12-06
> FMO10587.5prime
CAGTCGACATGAAATATCCATTTGTGAACGTTCGCCTGCCGCCCGAGGAA
ACCGTTGAGGTGGCCGCACCGATCTTCGAGGAGGGCATGGAAGTGGAGGT
GTTCACGCGCACGAACGATCGGGAAACCTGCGGCTGGTGGGTGGGCATTA
TTAAAATGCGCAAAGCGGAAATCTATGCGGTCGCGTACATCGGTTTTGAG
ACGTCCTACACCGAAATCTGTGAATTGGGTCGTCTGCGCGCCAAAAACTC
GAATCCGCCAATTACAGCCAAGACCTTCTACCAGTTCACGCTGCCCGTGC
CCGAGGAGTTGCGCGAAGAAGCCCAGAAGGATGGTATACACAAGGAGTTT
CAGCGCACAATCGATGCCGGCGTGTGCAACTACAGTCGCGATCTGGACGC
CCTGATTGTCATCTCCAAGTTTGAGCACACTCAGAAGCGAGCCATTATGC
TCAAGGATATGCATTTTCGTAATCTCTCACAAAAGGTTATGCTGTTGAAA
AGGACTGAAGAAGCTGCCCGTCAGCTCGAAACAACTAAACTGATGAGCCG
TGGAAACTACGTTGAGGAGTTCCGTGTGCGTGACGATCTCATGGGTTTGG
CGATTGGCTCGCATGGCTCGAATATTCAAGCGGCACGCACTGTGGACGGC
GTCACCAACATCGAGCTGGAGGAGAGTCCTGCACATTCAAAAATCAGCGG
AGAGACCGAGGAGTCTGTGCAGCGTGCCCGCGCGATGCTCGAATACGCCG
AGGAGTTCTTCCAGGTGCCAGGGAGTTGGTGGGCAAGGTGATTGGGCAAG
AATGGGCGCATTTATCCAGGAGATTGTGGACAAGAGTTGCGTGTTTCCAA
TCAAGGTGAGTGCTATCGCTGGCGACGATGAACAGGATCCAGAACATACC
ACGTGGAGCTGGCGCATGTACCCTTTGTGGTTCATTGGCACCGTGAGAGC
ATTGCAAATGCCAAGTGCTGTTGGAGTATCATCTGTCGCACTTGAAGGAA
GTAGAACAGTTGTCGTCAGGAAAAAATGAAGATGGATCAACAGCTTCCCG
GCATCCAGGGAATCCTCATGGGCTTACACCAGAGCTTCCCAATGAAACGG
GGCCTCTTGAATGCGCCTACAGC
FMO10587.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:17:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fmr1-RF | 3773 | CG6203-RF | 177..1260 | 9..1095 | 4895 | 97.4 | Plus |
Fmr1-RA | 3381 | CG6203-RA | 683..1766 | 9..1095 | 4895 | 97.4 | Plus |
Fmr1-RG | 4426 | CG6203-RG | 683..1757 | 9..1095 | 4750 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:17:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10105790..10106100 | 319..9 | 1555 | 100 | Minus |
3R | 32079331 | 3R | 10105060..10105370 | 864..553 | 1290 | 97.8 | Minus |
3R | 32079331 | 3R | 10105557..10105724 | 487..320 | 825 | 99.4 | Minus |
3R | 32079331 | 3R | 10104878..10105010 | 998..865 | 415 | 95.6 | Minus |
3R | 32079331 | 3R | 10105434..10105505 | 553..482 | 360 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:17:13 has no hits.
FMO10587.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-06 14:08:00 Download gff for
FMO10587.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmr1-RF | 141..1147 | 2..1012 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:25:54 Download gff for
FMO10587.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmr1-RA | 678..1684 | 2..1012 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:54:55 Download gff for
FMO10587.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmr1-RA | 678..1684 | 2..1012 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:54:55 Download gff for
FMO10587.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10104879..10105010 | 865..997 | 95 | <- | Minus |
3R | 10105060..10105369 | 554..864 | 97 | <- | Minus |
3R | 10105434..10105501 | 486..553 | 100 | <- | Minus |
3R | 10105559..10105724 | 320..485 | 99 | <- | Minus |
3R | 10105790..10106103 | 2..319 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:25:54 Download gff for
FMO10587.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5931281..5931446 | 320..485 | 99 | <- | Minus |
arm_3R | 5930601..5930732 | 865..997 | 95 | <- | Minus |
arm_3R | 5930782..5931091 | 554..864 | 97 | <- | Minus |
arm_3R | 5931156..5931223 | 486..553 | 100 | <- | Minus |
arm_3R | 5931512..5931825 | 2..319 | 98 | | Minus |