FMO10589.5prime Sequence
1135 bp (995 high quality bases) assembled on 2010-12-06
> FMO10589.5prime
CAGTCGACATGAAATATCCATTTGTGAACGTTCGCCTGCCGCCCGAGGAA
ACCGTTGAGGTGGCCGCACCGATCTTCGAGGAGGGCATGGAAGTGGAGGT
GTTCACGCGCACGAACGATCGGGAAACCTGCGGCTGGTGGGTGGGCATTA
TTAAAATGCGCAAAGCGGAAATCTATGCGGTCGCGTACATCGGTTTTGAG
ACGTCCTACACCGAAATCTGTGAATTGGGTCGTCTGCGCGCCAAAAACTC
GAATCCGCCAATTACAGCCAAGACCTTCTACCAGTTCACGCTGCCCGTGC
CCGAGGAGTTGCGCGAAGAAGCCCAGAAGGATGGTATACACAAGGAGTTT
CAGCGCACAATCGATGCCGGCGTGTGCAACTACAGTCGCGATCTGGACGC
CCTGATTGTCATCTCCAAGTTTGAGCACACTCAGAAGCGAGCTTGTATGC
TCAAGGATATGCATTTTCGTAATCTCTCACAAAAGGTTATGCTGTTGAAA
AGGACTGAAGAAGCTGCCCGTCAGCTCGAAACAACTAAACTGATGAGCCG
TGGAAACTACGTTGAGGAGTTCCGTGTGCGTGACGATCTCATGGGTTTGG
CGATTGGCTCGCATGGCTCGAATATTCAAGCGGCACGCACTGTGGACGGC
GTCACCAACATCGAGCTGGAGGAGAAGTCCTGCACATTCAAAAATCAGCA
GAGAGACCGAGGAGTCTGTGCAGCGTGCCCGCGCGATGCTCGAATACGCC
GAGGAGTTCTTCCAGGTGCCCAGGGAGTTGGTGGGCAAGGTGATTGGCAA
GAATGGGCGCATTATCCAGGAGATTGTGGACAAGAGTGGCGTGTTTCGAA
TCAAGGTGAGTGCTATCGCTGGCGACGATGAACAGGATCAGAACATACCA
CGTGAGCTGGCGCATGTACCCTTTGTGTTCATTGGCACCGTGGAGAGCAT
TGCAATGCAAAGTGCTGTTGGAGTATCATCTGTCGCACCTGAAGAAGTAA
AAACAGTTGCGTCAGGAGAGATGGAAATTGATCAGCAGCTTCGCGGCCAT
CAAGAATCCTCCATGGGCCTCCCCAAAGAGCTTCCCATTACGCGGGCGCT
CTTGACGCCGCTTACGCATGACATTGATCGGGTGC
FMO10589.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:17:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fmr1-RF | 3773 | CG6203-RF | 177..1271 | 9..1102 | 5090 | 98.2 | Plus |
Fmr1-RA | 3381 | CG6203-RA | 683..1777 | 9..1102 | 5090 | 98.2 | Plus |
Fmr1-RG | 4426 | CG6203-RG | 683..1768 | 9..1102 | 4945 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:17:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10105790..10106100 | 319..9 | 1555 | 100 | Minus |
3R | 32079331 | 3R | 10105060..10105370 | 864..553 | 1495 | 99.4 | Minus |
3R | 32079331 | 3R | 10105557..10105724 | 487..320 | 810 | 98.8 | Minus |
3R | 32079331 | 3R | 10104879..10105010 | 994..865 | 565 | 97 | Minus |
3R | 32079331 | 3R | 10105434..10105505 | 553..482 | 360 | 100 | Minus |
3R | 32079331 | 3R | 10104704..10104789 | 1087..1002 | 215 | 88.5 | Minus |
Blast to na_te.dros performed 2014-11-26 17:17:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7269..7329 | 616..678 | 112 | 66.7 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 8722..8782 | 616..678 | 112 | 66.7 | Plus |
FMO10589.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-06 14:08:01 Download gff for
FMO10589.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmr1-RF | 141..1244 | 2..1108 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:25:57 Download gff for
FMO10589.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmr1-RA | 678..1781 | 2..1108 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:54:58 Download gff for
FMO10589.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmr1-RA | 678..1781 | 2..1108 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:54:58 Download gff for
FMO10589.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10104875..10105010 | 865..1000 | 96 | <- | Minus |
3R | 10105060..10105369 | 554..864 | 99 | <- | Minus |
3R | 10105434..10105501 | 486..553 | 100 | <- | Minus |
3R | 10105559..10105724 | 320..485 | 98 | <- | Minus |
3R | 10105790..10106103 | 2..319 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:25:57 Download gff for
FMO10589.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5931281..5931446 | 320..485 | 98 | <- | Minus |
arm_3R | 5930597..5930732 | 865..1000 | 96 | <- | Minus |
arm_3R | 5930782..5931091 | 554..864 | 99 | <- | Minus |
arm_3R | 5931156..5931223 | 486..553 | 100 | <- | Minus |
arm_3R | 5931512..5931825 | 2..319 | 98 | | Minus |